Gene omics information

Query gene ID	ZmAffx.757.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.71	88.2	ZmAffx.757.1.A1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.15437.1.S1_at	CD219447	hypothetical protein LOC100191830	-	6e+0	At5g37670	15.7 kDa class I-related small heat shock protein-like (HSP15.7-CI)	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.834.1.A1_at	AI770566	-	-	8e-1	At1g54420	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.1342.1.S1_at	BG842254	-	-	4e-5	At1g23230	unknown protein	S.X.	H.G.	Please select
0.44	55.7	Zm.1960.1.A1_at	AW566154	palmitoyltransferase swf1	-	4e-1	At3g04970	zinc finger (DHHC type) family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.13366.1.A1_a_at	CF634270	-	-	3e-1	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.0	98.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.757.1.S1_at	AI745972	-	-	3e+0	At4g32960	unknown protein	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.9526.1.A1_at	AY110244.1	long-chain-fatty-acid-CoA ligase-like protein	-	2e-3	At3g16170	acyl-activating enzyme 13 (AAE13)	C.G.	S.X.	Please select
0.01	9e-2	36	Zm.482.1.S1_at	AF073488.1	bifunctional dihydrofolate reductase-thymidylate synthase	-	1e-50	At2g16370	THY-1 (THYMIDYLATE SYNTHASE 1)	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.1013.1.S1_at	CD436268	nucleic acid binding protein	-	4e+0	At5g56910	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.8283.1.S1_at	BM073508	hypothetical protein LOC100276098	-	7e-1	At3g21865	PEX22 (peroxin 22)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.3936.1.S1_at	AY112116.1	hypothetical protein LOC100275702	-	1e+0	At3g19900	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.3713.1.S1_at	CB334739	seed specific protein Bn15D14A	-	8e-4	At3g23090	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.18111.1.S1_at	CF632606	peroxidase 17	-	8e-4	At2g22420	peroxidase 17 (PER17) (P17)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.12220.1.A1_at	BM380993	DNA binding protein	-	2e+0	At5g55570	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At4g32960	829433	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	HgAffx.4033.1.A1_at	CK348657	-	-	3e+0	At3g57080	NRPE5	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HU10B11u_at	HU10B11u	-	-	7e-1	At5g58640	selenoprotein-related	C.G.	S.X.	Please select
0.06	1e-13	77	Oryza sativa	Os03g0762900	AK068645.1	-	Protein of unknown function DUF566 family protein	3e-1	At4g29800	PLP8 (PATATIN-LIKE PROTEIN 8)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-2	40	Populus trichocarpa	PtpAffx.214822.1.S1_at	pmrna28691	hypothetical protein	-	9e-7	At3g15358	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.14	6e-17	87	Triticum aestivum	Ta.24206.1.A1_at	BJ249376	-	-	4e+0	At4g22630	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1609277_at	CF204536.1	-	-	2e+0	At5g38020	S-adenosyl-L-methionine:carboxyl methyltransferase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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