Gene omics information

Query gene ID	ZmAffx.743.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	ZmAffx.743.1.S1_at	AI745735	-	-	8e-1	At4g28170	unknown protein	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.587.1.A1_at	AI715015	-	-	3e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	S.X.	H.G.	Please select
0.55	71.6	Zm.16824.1.S1_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.754.1.S1_at	AI745921	-	-	2e-1	At1g33960	AIG1 (AVRRPT2-INDUCED GENE 1)	S.X.	H.G.	Please select
0.30	29.8	Zm.2102.1.A1_at	AW267527	hypothetical protein LOC100274069	-	3e-3	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please select
0.18	11.6	ZmAffx.237.1.A1_at	AI670249	-	-	1e+1	At5g62480	ATGSTU9 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 9)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
42.4	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
36.2	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.5	99.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.5	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.2	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.743.1.A1_at	AI745735	-	-	8e-1	At4g28170	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	ZmAffx.1210.1.A1_at	BG841129	-	-	7e-2	At5g64230	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.6520.1.A1_at	AI833479	hypothetical protein LOC100276260	-	1e+0	At5g24580	copper-binding family protein	C.G.	S.X.	Please select
0.05	1e+0	32	Zm.2928.1.S1_at	BG265909	ATP binding protein	-	1e+1	At5g35090	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.17533.2.A1_at	CK347975	hypothetical protein LOC100191888	-	6e-5	At5g17380	pyruvate decarboxylase family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.14042.1.A1_at	AY107425.1	-	-	2e+0	At3g42570	peroxidase-related	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.1334.1.S1_at	BF729363	-	-	7e-4	At1g76540	CDKB2	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.7134.1.S1_at	CF634276	hypothetical protein LOC100272801 /// trans-cinnamate 4-monooxygenase	-	1e-18	At2g30490	C4H (CINNAMATE-4-HYDROXYLASE)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6743.2.S1_at	AY104873.1	permease I	-	2e-23	At5g62890	permease, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	34	Arabidopsis thaliana	At4g28170	828932	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	HgAffx.14726.1.S1_at	CB299414	-	-	3e+0	At2g04480	unknown protein	C.G.	S.X.	Please select
0.05	3e-17	87	Hordeum vulgare	Contig10364_at	Contig10364	-	-	3e-4	At3g57420	unknown protein	C.G.	S.X.	Please select
0.09	3e-8	59	Oryza sativa	Os05g0391200	AK059645.1	-	Conserved hypothetical protein	9e-7	At3g57420	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.31291.1.A1_at	CV241100	hypothetical protein	-	7e-5	At5g47650	ATNUDT2 (ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.13	3e-3	42	Triticum aestivum	TaAffx.107140.1.S1_at	CA705394	-	-	9e-4	At2g41770	unknown protein	C.G.	S.X.	Please select
0.05	9e-1	32	Vitis vinifera	1619016_at	CF405546	-	-	1e+1	At4g16295	SPH1 (S-PROTEIN HOMOLOGUE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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