Gene omics information

Query gene ID	ZmAffx.742.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	ZmAffx.742.1.S1_at	AI740139	-	-	3e+0	At1g10650	protein binding / zinc ion binding	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.1194.1.A1_at	BE025369	-	-	4e+0	At5g59990	-	S.X.	H.G.	Please select
0.48	61.3	Zm.14437.2.S1_at	AI600681	RNA binding protein	-	3e+0	At5g66010	RNA binding / nucleic acid binding / nucleotide binding	S.X.	H.G.	Please select
0.46	58.4	ZmAffx.559.1.A1_at	AI714543	-	-	3e+0	At5g48970	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.894.1.A1_at	AI770873	-	-	8e-1	At5g62300	40S ribosomal protein S20 (RPS20C)	S.X.	H.G.	Please select
0.32	33.4	Zm.2102.1.A1_at	AW267527	hypothetical protein LOC100274069	-	3e-3	At2g32080	PUR ALPHA-1	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.3	99.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.2	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.2	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.9	99.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.78	6e-163	571	ZmAffx.742.1.A1_at	AI740139	-	-	3e+0	At1g10650	protein binding / zinc ion binding	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.7574.1.A1_at	CO527472	ubiquitin fusion degradation protein 1	-	2e-16	At4g38930	ubiquitin fusion degradation UFD1 family protein	C.G.	S.X.	Please select
0.05	1e+0	32	Zm.15266.1.S1_at	BG841956	-	-	3e-1	At4g16880	disease resistance protein-related	C.G.	S.X.	Please select
0.05	5e+0	30	ZmAffx.511.1.A1_at	AI692026	-	-	8e-1	At1g38630	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.7088.1.S1_at	AY106783.1	charged multivesicular body protein 4b	-	9e-31	At2g19830	SNF7.2	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6507.1.S1_at	CO525968	hypothetical protein LOC100191970	-	2e-8	At2g46210	delta-8 sphingolipid desaturase, putative	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5434.1.S1_at	BM073094	50S ribosomal protein L6	-	2e-18	At1g05190	emb2394 (embryo defective 2394)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5434.1.S1_s_at	BM073094	IDP2469 protein /// 50S ribosomal protein L6 /// 50S ribosomal protein L6	-	2e-18	At1g05190	emb2394 (embryo defective 2394)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.3812.1.S1_at	CK347839	hypothetical protein LOC100277877	-	2e-36	At4g02060	PRL (PROLIFERA)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At1g10650	837608	protein binding / zinc ion binding	F:protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MPOVBF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.43671.1.S1_at	BF070903	-	-	8e-13	At1g69420	zinc finger (DHHC type) family protein	C.G.	S.X.	Please select
0.05	5e+0	30	Hordeum vulgare	HVSMEi0023A02r2_at	HVSMEi0023A02r2	-	-	2e+0	At2g24150	HHP3 (heptahelical protein 3)	C.G.	S.X.	Please select
0.02	6e+0	32	Oryza sativa	Os02g0758200	AK111266.1	-	Conserved hypothetical protein	2e+0	At3g51190	structural constituent of ribosome	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.13858.1.A1_at	CV271817	hypothetical protein	-	3e-57	At4g16720	60S ribosomal protein L15 (RPL15A)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-1	34	Triticum aestivum	TaAffx.31035.1.S1_at	CA620150	-	-	1e-2	At3g05570	unknown protein	C.G.	S.X.	Please select
0.04	8e-1	32	Vitis vinifera	1615472_at	CB346188	hypothetical LOC100243131	-	7e-11	At1g48790	mov34 family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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