Gene omics information

Query gene ID	ZmAffx.716.1.S1_at
Gene name	transparent testa 12 protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.50	65.7	ZmAffx.716.1.S1_at	AI739804	transparent testa 12 protein	-	2e-1	At4g03240	FH (FRATAXIN HOMOLOG)	S.X.	H.G.	Please select
0.60	77.8	Zm.8806.1.A1_at	BM075728	-	-	2e+1	At5g35640	-	S.X.	H.G.	Please select
0.60	77.8	Zm.482.1.S1_at	AF073488.1	bifunctional dihydrofolate reductase-thymidylate synthase	-	1e-50	At2g16370	THY-1 (THYMIDYLATE SYNTHASE 1)	S.X.	H.G.	Please select
0.50	65.7	Zm.19280.1.S1_at	CO524637	hypothetical protein LOC100276261	-	4e-6	At5g39660	CDF2 (CYCLING DOF FACTOR 2)	S.X.	H.G.	Please select
0.50	65.7	Zm.12546.2.A1_a_at	AI770557	ATP binding protein	-	3e+0	At5g56150	UBC30 (ubiquitin-conjugating enzyme 30)	S.X.	H.G.	Please select
0.46	58.4	Zm.18356.1.S1_at	CO518238	-	-	4e-1	At2g05810	armadillo/beta-catenin repeat family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.1	99.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
38.5	99.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.0	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.1	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.716.1.A1_at	AI739804	-	-	2e-1	At4g03240	FH (FRATAXIN HOMOLOG)	C.G.	S.X.	Please select
0.05	2e-2	38	Zm.7960.1.A1_at	CF637637	transparent testa 12 protein	-	5e-1	At4g21910	MATE efflux family protein	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.8187.1.A1_at	BG549555	kynurenine--oxoglutarate transaminase 1	-	6e+0	At5g43185	Expressed protein	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.6499.1.A1_at	CK985595	hypothetical protein LOC100193282	-	2e+0	At2g12940	UNE4 (unfertilized embryo sac 4)	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.15927.1.S1_at	CO523705	seryl-tRNA synthetase1	-	5e-9	At5g27470	seryl-tRNA synthetase / serine--tRNA ligase	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.13297.1.S1_at	CA827098	-	-	1e-2	At5g64905	PROPEP3 (Elicitor peptide 3 precursor)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.7998.1.A1_at	AY106482.1	hypothetical protein LOC100273454	-	3e+0	At4g11680	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.4197.1.A1_at	AI737259	-	-	2e-2	At5g63950	CHR24 (chromatin remodeling 24)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.18335.1.S1_at	CO521599	hypothetical protein LOC100274359	-	4e-2	At4g35390	AGF1 (AT-hook protein of GA feedback 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	Arabidopsis thaliana	At4g03240	828013	FH (FRATAXIN HOMOLOG)	Encodes AtFH, a frataxin homolog. Frataxin is required for the biogenesis of mitochondria in different organisms. AtFH knock-out mutants are lethal. Required for full activity of mitochondrial Fe-S proteins. Deficiency of AtFH induces oxidative stress.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e+0	32	Glycine max	PsAffx.C50000010_at	PsAffx.C50000010	-	-	4e+0	At5g55190	RAN3 (RAN GTPASE 3)	C.G.	S.X.	Please select
0.09	1e-7	56	Hordeum vulgare	Contig8458_at	Contig8458	-	-	1e-4	At4g25640	MATE efflux family protein	C.G.	S.X.	Please select
0.22	5e-25	115	Oryza sativa	Os10g0195000	AK106877.1	-	Multi antimicrobial extrusion protein MatE familyprotein	9e-1	At5g17450	heavy-metal-associated domain-containing protein / copper chaperone (CCH)-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.219886.1.S1_at	pmrna36042	hypothetical protein	-	1e+0	At4g30170	peroxidase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	2e-7	56	Triticum aestivum	TaAffx.2929.1.S1_at	CD861791	-	-	5e-7	At4g25640	MATE efflux family protein	C.G.	S.X.	Please select
0.07	1e-2	38	Vitis vinifera	1611719_at	CB343041	hypothetical protein LOC100267226	-	2e-3	At5g44050	MATE efflux family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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