Gene omics information

Query gene ID	ZmAffx.714.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.714.1.S1_at	AI739758	-	-	1e+1	At5g66930	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.14617.1.A1_at	BM080453	Hypothetical protein LOC100191188	-	2e+0	At2g33130	RALFL18 (ralf-like 18)	S.X.	H.G.	Please select
0.80	94.0	Zm.13975.1.A1_at	CK985455	carbonyl reductase 3	-	6e-1	At4g20880	ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2)	S.X.	H.G.	Please select
0.80	94.0	Zm.4853.1.S1_at	CD439703	-	-	2e-1	At2g45070	SEC61 BETA	S.X.	H.G.	Please select
0.67	85.8	Zm.4194.1.A1_at	AI861230	hypothetical protein LOC100276018	-	3e+0	At1g71180	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	S.X.	H.G.	Please select
0.21	15.5	Zm.17816.2.S1_a_at	CK144883	tRNA pseudouridine synthase family protein	-	2e-2	At1g76120	tRNA pseudouridine synthase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
31.2	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
31.1	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.8	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.4	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.8	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.5	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.86	0	646	ZmAffx.714.1.A1_at	AI739758	-	-	1e+1	At5g66930	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.17333.1.A1_s_at	CK369962	hypothetical protein LOC100276190	-	3e+0	At5g21280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.17333.1.A1_at	CK369962	-	-	3e+0	At5g21280	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.16525.3.A1_x_at	AI738309	deoxy xylulose synthase 2	-	7e-44	At5g56010	HSP81-3	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.13730.1.S1_at	CK827273	aminotransferase, class IV family protein	-	2e-7	At5g27410	aminotransferase class IV family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.672.1.A1_at	AF332177.1	beta-expansin 4	-	3e+0	At1g19990	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4742.1.A1_at	CO520887	-	-	1e-2	At2g04890	SCL21 (SCARECROW-LIKE 21)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.3781.1.S1_at	CD447284	syntaxin 132	-	3e-4	At1g11250	SYP125 (SYNTAXIN OF PLANTS 125)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.2347.1.S1_at	AW424529	-	-	3e-11	At1g72300	leucine-rich repeat transmembrane protein kinase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g66930	836827	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.16254.1.A1_at	CD414341	-	-	3e+0	At5g28150	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	EBro01_SQ003_E14_s_at	EBro01_SQ003_E14	-	-	1e+1	At3g19150	KRP6 (KIP-RELATED PROTEIN 6)	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	OsAffx.30725.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.201681.1.S1_at	pmrna3349	hypothetical protein	-	9e-17	At2g30630	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	1e-33	143	Triticum aestivum	Ta.26730.1.A1_at	CD490982	-	-	5e+0	At5g22070	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1617508_a_at	CF404361	hypothetical protein LOC100244876	-	2e-20	At3g61540	peptidase family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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