Gene omics information

Query gene ID	ZmAffx.70.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.70.1.A1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	S.X.	H.G.	Please select
0.67	85.8	Zm.301.2.A1_at	CO521836	hypothetical protein LOC100276367	-	4e-9	At2g34510	-	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.788.1.A1_at	AI759113	-	-	8e-1	At4g33925	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.5425.1.S1_a_at	AY105598.1	-	-	1e+0	At1g08010	zinc finger (GATA type) family protein	S.X.	H.G.	Please select
0.43	52.8	Zm.2234.1.S1_a_at	CO526542	hypothetical protein LOC100276749 /// hypothetical protein LOC100276758	-	2e+1	At5g53486	unknown protein	S.X.	H.G.	Please select
0.19	12.8	Zm.4308.1.A1_at	AY112093.1	-	-	1e-1	At1g08390	nucleic acid binding	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
12.6	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM202297	Mo17 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.7	95.4	GSM202290	Mo17 immature ear tissue, biological replicate 1	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
3.6	95.2	GSM206308	Lower pulvinus 15 min polysomal RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.4	94.9	GSM206331	Lower pulvinus 5 min polysomal RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	747	ZmAffx.70.1.S1_at	AI665164	-	-	8e-1	At2g37780	DC1 domain-containing protein	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.6564.1.A1_at	AW231699	hypothetical protein LOC100272535	-	2e+0	At4g34850	chalcone and stilbene synthase family protein	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.2867.1.A1_at	AY107561.1	-	-	8e-2	At1g28190	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.2867.1.S1_at	AY107561.1	hypothetical protein LOC100280394	-	8e-2	At1g28190	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.2810.1.S1_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.2810.1.S1_a_at	CK371548	calcitonin peptide-receptor component protein	-	7e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.9539.1.A1_at	AY105652.1	-	-	7e-8	At3g14205	phosphoinositide phosphatase family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.5513.1.A1_at	AI629866	-	-	3e-8	At1g73020	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.784.1.A1_at	CF005849	ngg1 interacting factor 3 like 1 binding protein 1	-	1e-8	At3g02950	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	Arabidopsis thaliana	At2g37780	818355	DC1 domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.67883.1.S1_at	BG046605	-	-	1e-15	At1g76690	OPR2	C.G.	S.X.	Please select
0.28	3e-11	67	Hordeum vulgare	Contig12154_at	Contig12154	-	-	2e+0	At5g04340	ZAT6 (ZINC FINGER OF ARABIDOPSIS THALIANA 6)	C.G.	S.X.	Please select
0.33	5e-19	95	Oryza sativa	Os05g0392000	AK060457.1	-	Hypothetical protein	7e-3	At1g69180	CRC (CRABS CLAW)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.202698.1.S1_at	pmrna5391	hypothetical protein	-	6e-2	At5g40730	AGP24	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	4e-9	61	Triticum aestivum	Ta.10567.1.S1_at	CD932356	-	-	2e-11	At5g13530	KEG (KEEP ON GOING)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1607301_at	CB340202	-	-	1e+0	At5g56650	ILL1	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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