Gene omics information

Query gene ID	ZmAffx.684.1.A1_at
Gene name	transferase family protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.85	95.9	ZmAffx.684.1.A1_at	AI734818	transferase family protein	-	1e+1	At5g40620	unknown protein	S.X.	H.G.	Please select
0.70	87.0	Zm.16502.4.A1_at	CK986103	hypothetical protein LOC100277865 /// hypothetical protein LOC100280121	-	1e-1	At1g51080	unknown protein	S.X.	H.G.	Please select
0.64	81.7	Zm.18251.1.A1_at	CN845321	-	-	5e-3	At5g66080	protein phosphatase 2C family protein / PP2C family protein	S.X.	H.G.	Please select
0.64	81.7	Zm.3966.1.A1_at	AI795713	-	-	5e-2	At1g56310	3'-5' exonuclease domain-containing protein	S.X.	H.G.	Please select
0.64	81.7	Zm.34.2.A1_at	AY103769.1	nuclear cap-binding protein subunit 2	-	1e-13	At5g44200	CBP20 (CAP-BINDING PROTEIN 20)	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.29.1.A1_at	AI657322	-	-	2e-1	At1g65445	transferase-related	S.X.	H.G.	Please select
0.61	79.5	Zm.11965.1.A1_at	BM382230	hypothetical protein LOC100275559	-	2e+0	At1g06070	bZIP transcription factor, putative (bZIP69)	S.X.	H.G.	Please select
0.59	76.1	Zm.5048.9.S1_at	AI600956	hypothetical protein LOC100191158	-	1e-5	At5g45410	unknown protein	S.X.	H.G.	Please select
0.59	76.1	Zm.704.1.S1_at	U15781.1	xyloglucan endotransglycosylase homolog1	-	3e-6	At5g57550	XTR3 (XYLOGLUCAN ENDOTRANSGLYCOSYLASE 3)	S.X.	H.G.	Please select
0.57	75.1	Zm.19194.1.A1_at	CO519708	-	-	1e-11	At3g10050	OMR1 (L-O-METHYLTHREONINE RESISTANT 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.1	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.3	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.9	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.8	99.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.1	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.2	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	3e-1	34	Zm.152.1.S1_at	J04550.1	auxin binding protein1	-	6e-1	At4g02980	ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.153.1.S1_at	CK827332	auxin binding protein homolog4	-	1e-4	At4g02980	ABP1 (ENDOPLASMIC RETICULUM AUXIN BINDING PROTEIN 1)	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.1100.1.A1_at	AY107948.1	-	-	4e+0	At5g37475	translation initiation factor-related	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.1100.1.S1_at	AY107948.1	-	-	4e+0	At5g37475	translation initiation factor-related	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.9710.1.S1_at	CF624968	hypothetical protein LOC100276125	-	4e+0	At3g04640	glycine-rich protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6886.1.A1_at	CK786773	hypothetical protein LOC100276053	-	2e-1	At1g64385	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.6234.1.S1_at	AI670674	hypothetical protein LOC100279472	-	4e-28	At2g30110	ATUBA1	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.17839.1.S1_at	U12679.1	glutathione S-transferase2	-	1e-1	At4g02520	ATGSTF2 (GLUTATHIONE S-TRANSFERASE PHI 2)	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.1576.1.A1_at	BM380980	hypothetical protein LOC100278247	-	1e+0	At5g02020	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	30	Arabidopsis thaliana	At5g40620	834061	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;MP	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	PsAffx.psZO003iB05r_at	PsAffx.psZO003iB05r	-	-	2e+1	At5g26630	MADS-box protein (AGL35)	C.G.	S.X.	Please select
0.05	2e+0	32	Hordeum vulgare	HA10H23u_x_at	HA10H23u	-	-	6e-4	At5g14780	FDH (FORMATE DEHYDROGENASE)	C.G.	S.X.	Please select
0.03	1e-4	48	Oryza sativa	Os10g0195600	AK100207.1	-	Transferase family protein	4e+0	At2g42380	bZIP transcription factor family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	7e-2	38	Populus trichocarpa	PtpAffx.225501.1.S1_at	pmrna44892	hypothetical protein	-	1e-7	At1g79670	RFO1 (RESISTANCE TO FUSARIUM OXYSPORUM 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	1e-2	40	Triticum aestivum	Ta.30590.1.A1_at	CK205601	-	-	2e+0	At4g15460	glycine-rich protein	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1615434_at	CB973471	hypothetical protein LOC100257403	-	1e+0	At5g04620	ATBIOF (BIOTIN F)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage