CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.647.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.2 ZmAffx.647.1.S1_at AI715075 - - 3e+0 At2g28500 LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) S.X. H.G.
0.44 55.7 RPTR-Zm-X17220-1_at RPTR-Zm-X17220-1 - - 0 S.X. H.G.
0.44 55.7 RPTR-Zm-J01347-4_at RPTR-Zm-J01347-4 - - 0 S.X. H.G.
0.44 55.7 RPTR-Zm-J01636-1_at RPTR-Zm-J01636-1 - - 0 S.X. H.G.
0.42 51.3 ZmAffx.313.1.S1_at AI670495 - - 3e+0 At3g49520 F-box family protein S.X. H.G.
0.31 31.6 ZmAffx.315.1.A1_x_at AI670497 - - 1e+1 At5g22240 OFP10 S.X. H.G.
0.18 11.6 ZmAffx.328.1.A1_at AI670510 - - 3e+0 At3g07510 unknown protein S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
52.8 100.0 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.2 99.3 GSM320471 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0 98.9 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3 98.5 GSM320468 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1 98.4 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8 98.3 GSM320472 protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5 98.3 GSM205421 B73 19 DAP endosperm tissue biological replicate 1 GSE8278 Non-additive and imprinted gene expression in hybrid maize endosperm_19DAP
7.2 97.8 GSM253281 ZM_8d_SG200_3Alu_II GSE10023 Maize gene expression during infection with Ustilago maydis
5.9 97.3 GSM258207 Wf9 11-day seedling aerial tissue biological replicate 3 GSE10237 Gene expression variation among eight maize inbreds
5.9 97.3 GSM206297 Lower pulvinus 30 min total RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.85 0 688 ZmAffx.647.1.A1_at AI715075 - - 3e+0 At2g28500 LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) C.G. S.X.
0.08 6e-9 59 ZmAffx.626.1.A1_at AI715054 - - 1e+1 At1g28135 unknown protein C.G. S.X.
0.08 6e-9 59 ZmAffx.626.1.S1_at AI715054 - - 1e+1 At1g28135 unknown protein C.G. S.X.
0.08 6e-9 59 ZmAffx.616.1.A1_at AI715044 - - 3e+0 At2g22970 serine carboxypeptidase S10 family protein C.G. S.X.
0.08 6e-9 59 ZmAffx.645.1.A1_at AI715073 - - 1e+1 At2g33480 ANAC041 (Arabidopsis NAC domain containing protein 41) C.G. S.X.
0.08 6e-9 59 ZmAffx.619.1.A1_at AI715047 - - 8e-1 At3g30260 AGL79 (AGAMOUS-LIKE 79) C.G. S.X.
0.08 6e-9 59 ZmAffx.616.1.S1_at AI715044 - - 3e+0 At2g22970 serine carboxypeptidase S10 family protein C.G. S.X.
0.08 6e-9 59 ZmAffx.606.1.A1_at AI715034 - - 3e+0 At3g12320 unknown protein C.G. S.X.
0.08 6e-9 59 ZmAffx.645.1.S1_at AI715073 - - 1e+1 At2g33480 ANAC041 (Arabidopsis NAC domain containing protein 41) C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 3e+0 32 Arabidopsis thaliana At2g28500 817398 LBD11 (LOB DOMAIN-CONTAINING PROTEIN 11) F:unknown;P:biological_process unknown;C:chloroplast;PBOMVAF - - - C.G. S.X.
0.05 1e+0 34 Glycine max GmaAffx.75624.1.S1_at AW311499 - - 7e+0 At3g13550 FUS9 (FUSCA 9) C.G. S.X.
0.04 6e+0 30 Hordeum vulgare HY08I14u_s_at HY08I14u - - 2e+0 At1g07680 unknown protein C.G. S.X.
0.02 6e+0 32 Oryza sativa Os12g0176500 AB045677.1 - - 3e-80 At1g21690 emb1968 (embryo defective 1968) C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.200618.1.S1_at pmrna1207 hypothetical protein - 1e-1 At1g18200 AtRABA6b (Arabidopsis Rab GTPase homolog A6b) C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.56488.1.S1_at CA650550 - - 2e-1 At2g28160 FRU (FER-LIKE REGULATOR OF IRON UPTAKE) C.G. S.X.
0.03 4e+0 30 Vitis vinifera 1618958_at AY427138.1 - - 3e-1 At4g00680 ADF8 (ACTIN DEPOLYMERIZING FACTOR 8) C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage