Gene omics information

Query gene ID	ZmAffx.62.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	ZmAffx.62.1.S1_at	AI665108	-	-	3e+0	At2g01370	DNA-binding storekeeper protein-related	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.1197.1.S1_at	BE055919	-	-	3e+0	At5g24316	proline-rich family protein	S.X.	H.G.	Please select
0.21	15.5	ZmAffx.649.1.A1_at	AI715077	-	-	3e+0	At4g22000	unknown protein	S.X.	H.G.	Please select
0.19	12.8	Zm.8981.1.S1_at	BM378421	early responsive to dehydration protein	-	6e-2	At1g30360	ERD4 (early-responsive to dehydration 4)	S.X.	H.G.	Please select
0.11	5.3	Zm.9639.1.A1_at	BM334436	-	-	1e+0	At3g53580	diaminopimelate epimerase family protein	S.X.	H.G.	Please select
0.09	4.0	RPTR-Zm-J01636-1_at	RPTR-Zm-J01636-1	-	-	0			S.X.	H.G.	Please select
0.08	3.4	RPTR-Zm-J01347-4_at	RPTR-Zm-J01347-4	-	-	0			S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
32.0	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.9	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.6	99.7	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.7	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.7	99.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.62.1.A1_at	AI665108	coronatine-insensitive protein 1	-	3e+0	At2g01370	DNA-binding storekeeper protein-related	C.G.	S.X.	Please select
0.16	3e-14	77	Zm.979.1.S1_at	BE638693	-	-	2e+1	At5g08320	unknown protein	C.G.	S.X.	Please select
0.06	2e-12	71	Zm.6614.1.A1_at	CO533019	coronatine-insensitive protein 1	-	1e+0	At2g26030	F-box family protein	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.14437.1.S1_at	CA403877	RNA binding protein	-	3e+0	At5g66010	RNA binding / nucleic acid binding / nucleotide binding	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.10175.1.A1_at	BM379420	hypothetical protein LOC100279966 /// pathogenesis-related protein 10	-	7e+0	At4g18692	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.99.1.A1_at	AY106851.1	ferritin1	-	7e-7	At2g40300	ATFER4 (ferritin 4)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4041.1.S1_a_at	AY313904.1	yabby10 protein	-	9e-10	At4g00180	YAB3 (YABBY3)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.12727.1.S1_at	CD997307	-	-	2e-6	At2g15690	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.480.1.A1_at	AI677621	transmembrane 9 superfamily protein member 4	-	8e-1	At1g18871	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At2g01370	814665	DNA-binding storekeeper protein-related	F:transcription regulator activity;P:biological_process unknown;C:unknown;PF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-1	36	Glycine max	GmaAffx.65448.1.S1_at	BU764231	-	-	3e-2	At1g77230	tetratricopeptide repeat (TPR)-containing protein	C.G.	S.X.	Please select
0.42	9e-36	149	Hordeum vulgare	HU05A05u_s_at	HU05A05u	-	-	4e+0	At4g12030	bile acid:sodium symporter family protein	C.G.	S.X.	Please select
0.16	8e-58	224	Oryza sativa	Os05g0449500	CB660789	-	COI1	5e+0	At5g48890	transcription factor	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e+0	32	Populus trichocarpa	PtpAffx.87800.1.S1_at	CK111574	-	-	2e+0	At3g14415	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.16	2e-23	109	Triticum aestivum	Ta.2138.2.S1_at	CA632124	-	-	1e+0	At1g55840	SEC14 cytosolic factor (SEC14) / phosphoglyceride transfer protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1620710_at	CK138155.1	-	-	2e-2	At1g17700	PRA1.F1 (PRENYLATED RAB ACCEPTOR 1.F1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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