Gene omics information

Query gene ID	ZmAffx.587.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	ZmAffx.587.1.A1_at	AI715015	-	-	3e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	S.X.	H.G.	Please select
0.73	89.9	Zm.16824.1.S1_at	CF602732	SAM domain family protein	-	5e-1	At3g07170	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.743.1.S1_at	AI745735	-	-	8e-1	At4g28170	unknown protein	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.754.1.S1_at	AI745921	-	-	2e-1	At1g33960	AIG1 (AVRRPT2-INDUCED GENE 1)	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.894.1.A1_at	AI770873	-	-	8e-1	At5g62300	40S ribosomal protein S20 (RPS20C)	S.X.	H.G.	Please select
0.22	16.9	Zm.18127.1.S1_at	CN845217	membrin 11	-	1e-8	At5g50440	MEMB12 (MEMBRIN 12)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.0	99.8	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.4	99.6	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.2	99.4	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.88	0	706	ZmAffx.587.1.S1_at	AI715015	-	-	3e+0	At5g35900	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	C.G.	S.X.	Please select
0.30	3e-23	107	ZmAffx.636.1.A1_at	AI715064	-	-	3e+0	At2g01505	CLE16 (CLAVATA3/ESR-RELATED 16)	C.G.	S.X.	Please select
0.23	3e-23	107	ZmAffx.636.1.S1_at	AI715064	-	-	3e+0	At2g01505	CLE16 (CLAVATA3/ESR-RELATED 16)	C.G.	S.X.	Please select
0.23	1e-22	105	ZmAffx.328.1.A1_at	AI670510	-	-	3e+0	At3g07510	unknown protein	C.G.	S.X.	Please select
0.23	1e-22	105	ZmAffx.328.1.S1_at	AI670510	-	-	3e+0	At3g07510	unknown protein	C.G.	S.X.	Please select
0.08	2e-9	61	ZmAffx.603.1.A1_at	AI715031	-	-	1e+1	At5g05430	-	C.G.	S.X.	Please select
0.08	2e-9	61	ZmAffx.603.1.S1_at	AI715031	-	-	1e+1	At5g05430	-	C.G.	S.X.	Please select
0.07	4e-7	54	ZmAffx.626.1.A1_at	AI715054	-	-	1e+1	At1g28135	unknown protein	C.G.	S.X.	Please select
0.07	4e-7	54	ZmAffx.626.1.S1_at	AI715054	-	-	1e+1	At1g28135	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g35900	833576	LBD35 (LOB DOMAIN-CONTAINING PROTEIN 35)	F:unknown;P:biological_process unknown;C:endomembrane system;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.12310.1.A1_at	CD391890	-	-	4e+0	At5g01230	FtsJ-like methyltransferase family protein	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	HU01G14w_at	HU01G14w	-	-	2e-1	At4g28140	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	Os03g0769100	AB022675.1	-	9S ribosomal protein	5e-1	At1g74970	RPS9 (RIBOSOMAL PROTEIN S9)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.218598.1.S1_at	pmrna34266	hypothetical protein	-	2e+0	At3g17240	mtLPD2 (LIPOAMIDE DEHYDROGENASE 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	Ta.9125.3.S1_a_at	BJ317666	-	-	4e+0	At3g02560	40S ribosomal protein S7 (RPS7B)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1614103_at	CF515571	hypothetical protein LOC100257061	-	2e-2	At3g12140	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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