Gene omics information

Query gene ID	ZmAffx.571.1.A1_at
Gene name	hypothetical protein LOC100191288
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	ZmAffx.571.1.A1_at	AI714687	hypothetical protein LOC100191288	-	3e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	S.X.	H.G.	Please select
0.55	71.6	Zm.5271.1.A1_at	AI615233	-	-	1e+0	At1g02160	-	S.X.	H.G.	Please select
0.36	41.3	Zm.3666.1.A1_at	BG873898	hypothetical protein LOC100191942	-	1e-2	At2g13560	malate oxidoreductase, putative	S.X.	H.G.	Please select
0.21	15.5	Zm.15406.1.A1_at	AI737751	hypothetical protein LOC100191191	-	1e-4	At2g25670	unknown protein	S.X.	H.G.	Please select
0.17	10.6	ZmAffx.758.1.A1_at	AI746000	hypothetical protein LOC100273671	-	3e-3	At4g22260	IM (IMMUTANS)	S.X.	H.G.	Please select
0.12	5.9	Zm.4617.1.A1_at	AI737356	-	-	2e+0	At3g54270	sucrose-phosphatase 3 (SPP3)	S.X.	H.G.	Please select
0.11	5.3	ZmAffx.216.1.S1_at	AI670224	-	-	1e+1	At5g44970	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.0	99.2	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM258199	B14a 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
5.9	97.3	GSM202286	B73 11-day seedling aerial tissue biological replicate 3	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data
5.6	97.1	GSM258173	B73 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
5.4	97.0	GSM253276	ZM_8d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.4	97.0	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM258187	B84xB73 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
5.1	96.8	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.6	96.4	GSM258188	Oh43xB73 11-day seedling aerial tissue biological replicate 2	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	755	ZmAffx.571.1.S1_at	AI714687	Hypothetical protein LOC100191288	-	3e+0	At5g20230	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.9943.1.A1_at	BI674800	cyclase	-	2e-1	At1g44542	cyclase family protein	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.258.1.A1_at	AI670332	hypothetical protein LOC100272955	-	8e-1	At2g39540	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.258.1.S1_at	AI670332	-	-	8e-1	At2g39540	gibberellin-regulated family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4893.1.A1_at	AW067307	hypothetical protein LOC100276864	-	2e-7	At5g11600	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.1674.1.S1_at	AY106902.1	hypothetical protein LOC100217253	-	9e-10	At1g30470	SIT4 phosphatase-associated family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.11858.1.S1_at	BM381287	3-5 exoribonuclease CSL4	-	6e-13	At5g38890	exoribonuclease-related	C.G.	S.X.	Please select
0.06	5e+0	30	ZmAffx.1094.1.S1_at	AW076179	hypothetical protein LOC100277126	-	2e-5	At2g43018	CPuORF17 (Conserved peptide upstream open reading frame 17)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.469.1.A1_at	AF178952.1	voltage-dependent anion channel protein 2	-	2e-4	At3g01280	VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At5g20230	832145	ATBCB (ARABIDOPSIS BLUE-COPPER-BINDING PROTEIN)	Al-stress-induced gene	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	3e-1	36	Glycine max	HgAffx.10991.1.S1_at	CB935463	-	-	1e-4	At4g24060	Dof-type zinc finger domain-containing protein	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	HV_CEb0012K09r2_at	HV_CEb0012K09r2	-	-	3e+0	At3g52470	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	C.G.	S.X.	Please select
0.04	1e+0	34	Oryza sativa	Os06g0105000	NM_185322.1	-	-	9e-1	At3g29300	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	1e+0	34	Populus trichocarpa	PtpAffx.48018.1.S1_at	DN501310	hypothetical protein	-	4e-1	At4g29270	acid phosphatase class B family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.26433.1.S1_at	CA689004	-	-	3e+0	At5g62280	unknown protein	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1613308_at	BQ795900	hypothetical protein LOC100247694	-	8e-14	At5g18580	FASS (FASS 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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