Gene omics information

Query gene ID	ZmAffx.567.1.A1_at
Gene name	hypothetical protein LOC100192551
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	ZmAffx.567.1.A1_at	AI714637	hypothetical protein LOC100192551	-	2e-1	At5g50760	auxin-responsive family protein	S.X.	H.G.	Please select
0.36	41.3	Zm.3523.1.S1_at	AY105303.1	hypothetical protein LOC100276213	-	4e-1	At1g23060	unknown protein	S.X.	H.G.	Please select
0.20	14.2	Zm.4744.1.A1_at	CA402773	FHA domain containing protein	-	5e+0	At4g32270	unknown protein	S.X.	H.G.	Please select
0.13	6.8	ZmAffx.758.1.S1_at	AI746000	-	-	3e-3	At4g22260	IM (IMMUTANS)	S.X.	H.G.	Please select
0.12	5.9	Zm.1581.1.S1_at	AW566202	-	-	1e+1	At3g43153	cAMP-dependent protein kinase inhibitor-related	S.X.	H.G.	Please select
0.11	5.3	Zm.3169.5.S1_a_at	AI739763	hypothetical protein LOC100279753 /// minichromosome maintenance protein	-	1e-1	At5g44635	minichromosome maintenance family protein / MCM family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
7.1	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.0	95.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
3.8	95.5	GSM202319	Mo17 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.7	95.4	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
3.6	95.2	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.567.1.S1_at	AI714637	Hypothetical protein LOC100192551	-	2e-1	At5g50760	auxin-responsive family protein	C.G.	S.X.	Please select
0.04	5e-3	40	Zm.11913.1.S1_at	CF635032	hypothetical protein LOC100273863	-	3e+0	At5g28295	unknown protein	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.12690.1.S1_at	CA831966	hypothetical protein LOC100191357	-	5e-23	At4g12790	ATP-binding family protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.8050.1.A1_at	CF244335	ABC transporter C05D10.3 in chromosome III	-	2e-19	At1g17840	WBC11 (WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11)	C.G.	S.X.	Please select
0.05	1e+0	32	ZmAffx.908.1.A1_at	AI770943	-	-	8e-1	At5g41720	-	C.G.	S.X.	Please select
0.05	1e+0	32	ZmAffx.908.1.S1_at	AI770943	hypothetical protein LOC100279225	-	8e-1	At5g41720	-	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.15912.1.S1_at	AF200525.1	cellulose synthase-1	-	2e-99	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.10829.1.S1_at	BM381574	hypothetical protein LOC100191152	-	3e-34	At4g15130	catalytic/ choline-phosphate cytidylyltransferase/ nucleotidyltransferase	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9672.1.A1_x_at	BM349283	-	-	3e-1	At5g52750	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	2e-1	36	Arabidopsis thaliana	At5g50760	835148	auxin-responsive family protein	F:molecular_function unknown;P:response to auxin stimulus;C:unknown;PO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e+0	32	Glycine max	HgAffx.8751.1.S1_at	CB379750	-	-	2e-1	At2g31945	unknown protein	C.G.	S.X.	Please select
0.07	4e-1	34	Hordeum vulgare	Contig2135_s_at	Contig2135	-	-	4e-2	At5g23660	MTN3 (Arabidopsis homolog of Medicago truncatula MTN3)	C.G.	S.X.	Please select
0.38	1e-25	117	Oryza sativa	Os10g0170000	AK121907.1	-	Nucleotide-sensitive chloride conductanceregulator family protein	2e+0	At5g25890	IAA28 (INDOLE-3-ACETIC ACID INDUCIBLE 28)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e+0	32	Populus trichocarpa	PtpAffx.43377.1.A1_s_at	CV274860	hypothetical protein	-	5e-1	At5g07930	MCT2 (mei2 C-Terminal RRM only like 2)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.10	3e-6	52	Triticum aestivum	Ta.27676.1.S1_at	BQ170546	-	-	6e-1	At5g62290	nucleotide-sensitive chloride conductance regulator (ICln) family protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1618282_at	CF372678	hypothetical protein LOC100245712	-	2e-20	At2g02470	AL6 (ALFIN-LIKE 6)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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