Gene omics information

Query gene ID	ZmAffx.566.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	ZmAffx.566.1.S1_at	AI714636	-	-	2e-1	At5g05610	AL1 (ALFIN-LIKE 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.17357.1.S1_at	CK370769	-	-	5e+0	At1g29195	unknown protein	S.X.	H.G.	Please select
0.18	11.6	Zm.4705.1.A1_at	BG840802	-	-	2e-6	At1g14980	CPN10 (CHAPERONIN 10)	S.X.	H.G.	Please select
0.11	5.3	Zm.5744.1.A1_at	BM332131	hypothetical protein LOC100272761	-	1e+0	At3g14640	CYP72A10	S.X.	H.G.	Please select
0.07	2.9	Zm.800.2.A1_at	AI714523	Phosphoenolpyruvate carboxylase	-	8e-5	At3g14940	ATPPC3 (PHOSPHOENOLPYRUVATE CARBOXYLASE 3)	S.X.	H.G.	Please select
0.05	1.9	Zm.2698.1.A1_at	AW091087	hypothetical protein LOC100191742	-	2e+0	At1g63840	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
51.9	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
50.0	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
39.7	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.8	99.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.9	99.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.3	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.9	96.7	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.566.1.A1_at	AI714636	-	-	2e-1	At5g05610	AL1 (ALFIN-LIKE 1)	C.G.	S.X.	Please select
0.15	1e-6	52	Zm.12951.1.S1_at	CD444057	hypothetical protein LOC100274682	-	3e+0	At5g13450	ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative	C.G.	S.X.	Please select
0.04	2e-5	48	Zm.5851.12.A1_at	BI644197	hypothetical protein LOC100275208	-	2e+0	At3g49460	60S acidic ribosomal protein-related	C.G.	S.X.	Please select
0.04	2e-5	48	Zm.5114.1.A1_at	CK347637	-	-	9e-1	At1g28610	GDSL-motif lipase, putative	C.G.	S.X.	Please select
0.05	9e-5	46	Zm.18949.1.A1_at	CO533095	hypothetical protein LOC100280231	-	4e-2	At4g37550	formamidase, putative / formamide amidohydrolase, putative	C.G.	S.X.	Please select
0.03	9e-2	36	ZmAffx.1466.1.S1_at	11990232-33	-	-	4e-16	Atcg00530	-	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.9140.2.A1_a_at	CF634748	-	-	3e-1	At3g57960	emsy N terminus domain-containing protein / ENT domain-containing protein	C.G.	S.X.	Please select
0.07	3e-1	34	Zm.9541.1.A1_at	BM350357	hypothetical protein LOC100278387	-	6e+0	At5g60400	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.6505.1.A1_at	AI692111	SAM domain family protein	-	2e-1	At5g52220	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-1	36	Arabidopsis thaliana	At5g05610	830444	AL1 (ALFIN-LIKE 1)	AL1 encodes a member of the Alfin-Like family of nuclear-localized PhD domain containing homeodomain proteins. Binds to H3K4 di or trimethylated DNA.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	7e-2	38	Glycine max	GmaAffx.67655.1.S1_at	CA820167	-	-	8e-1	At5g38320	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	HZ62C10r_at	HZ62C10r	-	-	8e-1	At2g34315	disease resistance protein-related	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	Os08g0225000	9636.m01262	-	Beta-hydroxyacyl-ACP dehydratase precursor (Fattyacid synthesis protein)	2e-17	At2g22230	beta-hydroxyacyl-ACP dehydratase, putative	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.98516.1.S1_at	DN487107	-	-	7e-1	At2g01890	PAP8 (PURPLE ACID PHOSPHATASE 8)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	36	Triticum aestivum	Ta.24687.2.S1_at	CA652970	-	-	3e+0	At2g10535	LCR29 (Low-molecular-weight cysteine-rich 29)	C.G.	S.X.	Please select
0.04	6e-2	36	Vitis vinifera	1617856_at	CF517384	-	-	2e-1	At1g09950	transcription factor-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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