Gene omics information

Query gene ID	ZmAffx.561.1.S1_at
Gene name	Hypothetical protein LOC100192917
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	ZmAffx.561.1.S1_at	AI714590	Hypothetical protein LOC100192917	-	3e+0	At4g36100	-	S.X.	H.G.	Please select
0.73	89.9	Zm.12374.1.S1_at	BQ577812	-	-	3e+0	At1g66800	cinnamyl-alcohol dehydrogenase family / CAD family	S.X.	H.G.	Please select
0.67	85.8	Zm.16789.1.S1_a_at	AY530962.1	26S protease regulatory subunit 6B /// 26S proteasome regulatory complex ATPase RPT3	-	3e-77	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	S.X.	H.G.	Please select
0.67	85.8	Zm.8481.1.A1_at	BM074317	hypothetical protein LOC100193693	-	3e-1	At1g04645	self-incompatibility protein-related	S.X.	H.G.	Please select
0.44	55.7	Zm.4273.2.A1_at	AI665197	heat shock 70 kDa protein 4	-	3e-10	At1g79920	ATP binding	S.X.	H.G.	Please select
0.23	18.6	Zm.12531.1.A1_at	AI740174	-	-	2e+0	At3g27328	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.0	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.3	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.7	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.561.1.A1_at	AI714590	hypothetical protein LOC100192917	-	3e+0	At4g36100	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6816.1.A1_at	AY104584.1	hypothetical protein LOC100274437	-	2e-1	At5g15820	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.17218.1.A1_at	CK347906	-	-	5e-7	At3g58020	heat shock protein binding	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.17218.1.S1_at	AY107430.1	-	-	5e-7	At3g58020	heat shock protein binding	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.10716.1.S1_at	BQ539187	-	-	2e+0	At5g15750	RNA-binding S4 domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9657.1.A1_at	BM350732	-	-	2e+1	At5g43570	serine-type endopeptidase inhibitor	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.884.1.A2_at	BM072777	phosphofructose kinase1	-	1e-69	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.884.1.A1_at	AF334143.1	phosphofructose kinase1	-	1e-69	At1g07110	F2KP (FRUCTOSE-2,6-BISPHOSPHATASE)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4074.1.S1_at	CD568857	myristoyl-acyl carrier protein thioesterase	-	7e-8	At1g08510	FATB (fatty acyl-ACP thioesterases B)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At4g36100	829766	-	F:unknown;P:vesicle-mediated transport, vesicle docking during exocytosis;C:peroxisome;PFOM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e+0	32	Glycine max	GmaAffx.34007.1.A1_at	CD401341	-	-	1e+0	At5g56600	PRF3 (PROFILIN 3)	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	AF032681_at	AF032681	-	-	6e-1	At1g75717	unknown protein	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os01g0818700	AK066550.1	-	Leucine-rich repeat, plant specific containingprotein	3e-3	At5g01950	ATP binding / kinase/ protein serine/threonine kinase	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.152801.1.S1_at	CF936940	hypothetical protein	-	4e-3	At3g18520	HDA15	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.38	6e-54	210	Triticum aestivum	Ta.15981.1.S1_at	CA502682	-	-	1e+1	At5g42990	UBC18 (ubiquitin-conjugating enzyme 18)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1622580_at	CF403741	-	-	2e-1	At3g32090	transcription factor-related	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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