CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.559.1.A1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.52 67.3 ZmAffx.559.1.A1_at AI714543 - - 3e+0 At5g48970 mitochondrial substrate carrier family protein S.X. H.G.
0.59 76.1 ZmAffx.742.1.S1_at AI740139 - - 3e+0 At1g10650 protein binding / zinc ion binding S.X. H.G.
0.53 69.1 ZmAffx.894.1.A1_at AI770873 - - 8e-1 At5g62300 40S ribosomal protein S20 (RPS20C) S.X. H.G.
0.50 65.7 ZmAffx.1194.1.A1_at BE025369 - - 4e+0 At5g59990 - S.X. H.G.
0.48 61.3 Zm.14437.2.S1_at AI600681 RNA binding protein - 3e+0 At5g66010 RNA binding / nucleic acid binding / nucleotide binding S.X. H.G.
0.42 51.3 ZmAffx.812.1.A1_at AI770420 - - 8e-4 At1g49730 protein kinase family protein S.X. H.G.
0.31 31.6 Zm.2102.1.A1_at AW267527 hypothetical protein LOC100274069 - 3e-3 At2g32080 PUR ALPHA-1 S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
6.9 97.7 GSM202304 B73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
6.7 97.6 GSM202292 B73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
5.6 97.1 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.8 96.6 GSM202298 B73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.6 96.4 GSM202299 Mo17xB73 immature ear tissue, biological replicate 2 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.6 96.4 GSM202295 Mo17xB73 immature ear tissue, biological replicate 1 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.3 96.1 GSM206301 Upper pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.3 96.1 GSM206326 Upper pulvinus 15 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.2 96.0 GSM202306 Mo17xB73 immature ear tissue, biological replicate 3 GSE8176 Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
4.1 95.9 GSM206330 Lower pulvinus 2 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 807 ZmAffx.559.1.S1_at AI714543 - - 3e+0 At5g48970 mitochondrial substrate carrier family protein C.G. S.X.
0.02 3e-1 34 Zm.4874.1.A1_at BU098855 metal ion binding protein - 2e-1 At2g28660 copper-binding family protein C.G. S.X.
0.03 3e-1 34 Zm.2297.1.A1_at AW352507 hypothetical protein LOC100192643 - 4e-1 At3g06750 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.01 1e+0 32 Zm.700.1.A1_at CA403882 heat shock 70 kDa protein - 2e-54 At5g09590 MTHSC70-2 (MITOCHONDRIAL HSP70 2) C.G. S.X.
0.01 1e+0 32 Zm.6732.5.S1_at CK370359 - - 2e-14 At1g17220 FUG1 (fu-gaeri1) C.G. S.X.
0.02 1e+0 32 Zm.646.2.A1_a_at AF129859.1 CENPCA protein - 7e-1 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.02 1e+0 32 Zm.646.2.S1_at AF129859.1 CENPCA protein - 7e-1 At5g57290 60S acidic ribosomal protein P3 (RPP3B) C.G. S.X.
0.02 1e+0 32 Zm.16537.1.S1_at AY103617.1 40S ribosomal protein SA - 4e-70 At1g72370 P40 C.G. S.X.
0.02 1e+0 32 Zm.14501.4.S1_a_at CK849957 hypothetical protein LOC100191411 /// hypothetical protein LOC100280317 - 3e-46 At5g22060 ATJ2 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 3e+0 32 Arabidopsis thaliana At5g48970 834956 mitochondrial substrate carrier family protein F:binding;P:transport, mitochondrial transport;C:mitochondrial inner membrane, membrane;MFPO - - - C.G. S.X.
0.04 4e+0 32 Glycine max Gma.1608.1.A1_at BE658702 - - 3e+0 At4g22440 unknown protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig26136_at Contig26136 - - 5e+0 At3g46320 histone H4 C.G. S.X.
0.05 6e+0 32 Oryza sativa OsAffx.20160.1.S1_at - - - 0 C.G. S.X.
0.03 4e+0 32 Populus trichocarpa PtpAffx.161952.1.A1_at CK092589 - - 1e+0 At5g23280 TCP family transcription factor, putative C.G. S.X.
0.04 8e-1 34 Triticum aestivum TaAffx.81291.1.S1_at CA687749 - - 1e+1 At5g24890 unknown protein C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1607736_at BQ799155 - - 8e-1 At3g12480 NF-YC11 (NUCLEAR FACTOR Y, SUBUNIT C11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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