Gene omics information

Query gene ID	ZmAffx.536.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.59	76.1	ZmAffx.536.1.S1_at	AI711796	-	-	1e+1	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	S.X.	H.G.	Please select
0.81	94.3	Zm.5775.1.A1_at	AI649573	-	-	1e+1	At3g06600	unknown protein	S.X.	H.G.	Please select
0.80	94.0	Zm.53.1.S1_at	AB021176.1	root cap periphery gene2	-	2e-1	At3g19430	late embryogenesis abundant protein-related / LEA protein-related	S.X.	H.G.	Please select
0.75	90.8	Zm.13664.1.S1_at	BG836397	-	-	6e-17	At3g15610	transducin family protein / WD-40 repeat family protein	S.X.	H.G.	Please select
0.69	86.5	Zm.3908.1.S1_at	CF036708	hypothetical protein LOC100193155	-	2e-3	At5g15750	RNA-binding S4 domain-containing protein	S.X.	H.G.	Please select
0.61	79.5	Zm.1039.3.S1_at	AI677375	Hypothetical protein LOC100194359	-	3e+0	At4g18580	unknown protein	S.X.	H.G.	Please select
0.61	79.5	Zm.8632.1.A1_at	BM268513	-	-	5e+0	At3g55672	-	S.X.	H.G.	Please select
0.57	75.1	ZmAffx.1052.1.S1_at	AI881839	KH domain containing protein	-	3e+0	At1g75090	methyladenine glycosylase family protein	S.X.	H.G.	Please select
0.55	71.6	Zm.17267.1.S1_at	CK368940	hypothetical protein LOC100275082	-	5e-1	At1g80920	J8	S.X.	H.G.	Please select
0.52	67.3	Zm.16895.1.A1_at	BM075234	-	-	2e+0	At5g15100	PIN8 (PIN-FORMED 8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
33.8	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.0	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.7	99.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.7	99.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.7	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.5	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.1	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.8	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.98	0	791	ZmAffx.536.1.A1_at	AI711796	-	-	1e+1	At5g65430	GRF8 (GENERAL REGULATORY FACTOR 8)	C.G.	S.X.	Please select
0.19	5e-37	153	Zm.4969.1.A1_at	CD991522	-	-	6e+0	At5g59230	transcription factor-related	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.5472.1.A1_at	AI622092	-	-	1e+0	At3g19980	ATFYPP3 (FLOWER-SPECIFIC, PHYTOCHROME-ASSOCIATED PROTEIN PHOSPHATASE 3)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8244.1.S1_at	BM073405	-	-	2e+0	At1g30972	-	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.661.2.A1_at	AF290415.1	chloroplast RNA splicing1	-	6e-2	At3g18390	EMB1865 (embryo defective 1865)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.661.2.S1_a_at	CF625277	chloroplast RNA splicing1	-	6e-2	At3g18390	EMB1865 (embryo defective 1865)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.578.1.S1_at	AF112150.1	MADS box protein 3	-	3e-3	At5g60910	AGL8 (agamous-like 8)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.497.1.A1_at	AF236372.1	stomatin-like protein	-	2e-1	At5g54100	band 7 family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.2372.1.S1_at	AY104358.1	Hypothetical protein LOC100216968	-	2e+0	At1g76560	CP12-3	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g65430	836668	GRF8 (GENERAL REGULATORY FACTOR 8)	member of 14-3-3 proteins. This protein is reported to interact with the BZR1 transcription factor involved in brassinosteroid signaling and may affect the nucleocytoplasmic shuttling of BZR1	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	7e-2	38	Glycine max	GmaAffx.51101.1.S1_at	BU579058	-	-	9e-1	At2g32030	GCN5-related N-acetyltransferase (GNAT) family protein	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	Contig21877_s_at	Contig21877	-	-	3e+0	At1g33940	-	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os01g0916300	AK121997.1	-	PQBP-1 protein (Nuclear protein containing a WWdomain) (Npw38) (JM26 protein)	2e-24	At2g41020	WW domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	Ptp.5451.1.S1_at	CK116515	tubulin, beta chain /// tubulin, beta chain	-	1e-68	At2g29550	TUB7	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+1	30	Triticum aestivum	TaAffx.58874.1.S1_at	CA613750	-	-	1e+0	At3g19710	BCAT4 (BRANCHED-CHAIN AMINOTRANSFERASE4)	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1617116_s_at	CA817983	-	-	3e+0	At4g34290	SWIB complex BAF60b domain-containing protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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