Gene omics information

Query gene ID	ZmAffx.533.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.82	94.6	ZmAffx.533.1.S1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	S.X.	H.G.	Please select
0.71	88.2	Zm.13456.2.A1_at	AY111230.1	Hypothetical protein LOC100194201	-	5e+0	At3g50520	phosphoglycerate/bisphosphoglycerate mutase family protein	S.X.	H.G.	Please select
0.60	77.8	Zm.3964.1.A1_a_at	AF205603.1	ferric-chelate reductase (NADH)2	-	1e-17	At5g17770	ATCBR (ARABIDOPSIS THALIANA NADH:CYTOCHROME B5 REDUCTASE 1)	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.1198.1.A1_at	BE056195	-	-	2e-1	At1g75040	PR5 (PATHOGENESIS-RELATED GENE 5)	S.X.	H.G.	Please select
0.53	69.1	Zm.10593.1.A1_at	BM380000	hypothetical protein LOC100194168	-	1e+0	At3g55350	unknown protein	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.962.1.A1_at	AI833777	hypothetical protein LOC100275523	-	3e-22	At1g64680	unknown protein	S.X.	H.G.	Please select
0.43	52.8	Zm.17625.1.A1_at	CF631845	-	-	4e-23	At1g10200	WLIM1	S.X.	H.G.	Please select
0.40	48.5	Zm.18012.1.A1_at	CK827313	-	-	2e-3	At5g48950	thioesterase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
41.5	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
39.9	99.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.4	99.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.7	99.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.6	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.6	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.97	0	773	ZmAffx.533.1.A1_at	AI711769	-	-	8e-1	At5g11790	Ndr family protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.4752.1.A1_at	BQ538699	NF-180	-	5e-1	At4g18400	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.18000.1.A1_at	CK827977	-	-	6e+0	At4g31730	GDU1 (GLUTAMINE DUMPER 1)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.8255.1.A1_at	BM073418	hypothetical protein LOC100277720	-	4e-1	At3g55790	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4747.1.S1_a_at	AY105845.1	small nuclear ribonucleoprotein-associated protein B	-	3e-9	At5g44500	small nuclear ribonucleoprotein associated protein B, putative / snRNP-B, putative / Sm protein B, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4640.1.A1_at	CF623843	KH domain containing protein	-	3e+0	At2g31085	CLE6 (CLAVATA3/ESR-RELATED 6)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.4319.1.A1_at	AI855081	hypothetical protein LOC100191231	-	3e+0	At2g31560	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.2910.1.S1_a_at	CK145276	hypothetical protein LOC100217030 /// hypothetical protein LOC100277437	-	8e+0	At5g02920	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.2910.1.S1_at	CK145276	hypothetical protein LOC100217030	-	8e+0	At5g02920	ubiquitin-protein ligase	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Arabidopsis thaliana	At5g11790	831051	Ndr family protein	F:molecular_function unknown;P:cell differentiation;C:cellular_component unknown;MPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.12370.1.S1_at	BE059411	-	-	2e-3	At3g60840	MAP65-4 (MICROTUBULE-ASSOCIATED PROTEIN 65-4)	C.G.	S.X.	Please select
0.13	4e-10	63	Hordeum vulgare	HB11I22r_at	HB11I22r	-	-	3e+0	At5g51220	ubiquinol-cytochrome C chaperone family protein	C.G.	S.X.	Please select
0.06	2e+0	34	Oryza sativa	Os12g0510000	AK101963.1	-	Hypothetical protein	3e+0	At4g04110	Toll-Interleukin-Resistance (TIR) domain-containing protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.54064.1.S1_s_at	BI131020	hypothetical protein	-	3e-71	At1g14830	ADL1C (ARABIDOPSIS DYNAMIN-LIKE PROTEIN 1C)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.21	3e-28	125	Triticum aestivum	TaAffx.87089.1.S1_at	CA595970	-	-	1e+0	At4g18620	-	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1607023_at	CF568971	-	-	1e-2	At2g45720	armadillo/beta-catenin repeat family protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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