CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.501.1.S1_at

Gene name

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.92 99.2 ZmAffx.501.1.S1_at AI691747 - - 8e-1 At5g62100 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) S.X. H.G.
0.59 76.1 ZmAffx.361.1.A1_at AI670571 - - 8e-1 At1g15800 unknown protein S.X. H.G.
0.56 74.4 Zm.13913.1.S1_s_at AF073332.1 ROA protein 1 /// replication origin activator 2 /// replication origin activator 4 - 8e-11 At5g46280 DNA replication licensing factor, putative S.X. H.G.
0.56 74.4 Zm.10390.1.A1_at AY108030.1 hypothetical protein LOC100193343 - 2e+0 At1g19600 pfkB-type carbohydrate kinase family protein S.X. H.G.
0.55 71.6 Zm.13899.1.S1_x_at AF099383.1 R2R3MYB-domain protein - 6e-2 At4g37780 MYB87 (MYB DOMAIN PROTEIN 87) S.X. H.G.
0.54 69.8 Zm.762.1.A1_a_at BG349623 - - 1e-4 At3g05740 RECQI1 (Arabidopsis RecQ helicase l1) S.X. H.G.
0.52 67.3 ZmAffx.29.1.S1_at AI657322 - - 2e-1 At1g65445 transferase-related S.X. H.G.
0.52 67.3 ZmAffx.370.1.S1_at AI673868 - - 3e+0 At2g42610 LSH10 (LIGHT SENSITIVE HYPOCOTYLS 10) S.X. H.G.
0.51 66.4 ZmAffx.375.1.A1_at AI673907 - - 3e+0 At1g35340 ATP-dependent protease La (LON) domain-containing protein S.X. H.G.
0.48 61.3 ZmAffx.338.1.S1_at AI670525 - - 3e+0 At4g12460 ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B) S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.8 99.5 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.7 99.5 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6 99.5 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4 99.1 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5 99.0 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4 99.0 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8 99.0 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1 98.9 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.2 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8 98.7 GSM320459 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
1.00 0 724 ZmAffx.501.1.A1_at AI691747 - - 8e-1 At5g62100 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) C.G. S.X.
0.02 3e-1 34 Zm.12820.1.A1_at CA399622 hypothetical protein LOC100275831 - 1e-1 At4g01430 nodulin MtN21 family protein C.G. S.X.
0.02 5e+0 30 Zm.6314.1.A1_at AI691362 - - 2e+0 At5g18150 unknown protein C.G. S.X.
0.03 5e+0 30 Zm.18821.1.A1_at CO527653 hypothetical protein LOC100216823 - 2e+0 At2g44810 DAD1 (DEFECTIVE ANTHER DEHISCENCE 1) C.G. S.X.
0.02 5e+0 30 Zm.18280.1.S1_at BG840762 hypothetical protein LOC100193238 - 2e+0 At5g42797 LCR28 (Low-molecular-weight cysteine-rich 28) C.G. S.X.
0.02 5e+0 30 Zm.18314.1.S1_at CO520519 oil yellow1 - 3e+0 At5g45930 CHLI2 (MAGNESIUM CHELATASE I2) C.G. S.X.
0.03 5e+0 30 Zm.15875.1.A1_at BM335822 - - 2e+0 At5g26848 unknown protein C.G. S.X.
0.01 5e+0 30 Zm.15445.1.A1_at AY103633.1 - - 7e-23 At3g57290 EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) C.G. S.X.
0.01 5e+0 30 Zm.15445.1.S1_at CD058585 hypothetical protein LOC100272758 - 7e-23 At3g57290 EIF3E (EUKARYOTIC TRANSLATION INITIATION FACTOR 3E) C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 34 Arabidopsis thaliana At5g62100 836330 ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. - - - C.G. S.X.
0.04 4e+0 32 Glycine max GmaAffx.56109.1.A1_at BU544324 - - 7e-1 At4g04957 - C.G. S.X.
0.04 4e-1 34 Hordeum vulgare HVSMEb0011P07r2_at HVSMEb0011P07r2 - - 4e+0 At3g21175 ZML1 (ZIM-LIKE 1) C.G. S.X.
0.06 7e-6 52 Oryza sativa Os12g0423100 NM_195975.1 - - 6e+0 At3g27890 NQR (NADPH:QUINONE OXIDOREDUCTASE) C.G. S.X.
0.05 1e+0 34 Populus trichocarpa PtpAffx.99434.1.S1_at CV245843 hypothetical protein - 6e-31 At4g11880 AGL14 (agamous-like 14) C.G. S.X.
0.04 3e+0 32 Triticum aestivum TaAffx.50258.1.S1_at CA743808 - - 3e+0 At3g07590 small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putative C.G. S.X.
0.04 9e-1 32 Vitis vinifera 1611200_at CF203038.1 - - 3e-1 At5g24610 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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