Gene omics information

Query gene ID	ZmAffx.485.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.75	90.8	ZmAffx.485.1.A1_at	AI691349	-	-	8e-1	Atmg00140	-	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1019.1.S1_at	AI881532	-	-	3e+0	At2g29070	ubiquitin fusion degradation UFD1 family protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.597.1.A1_at	AI715025	-	-	8e-1	At1g43260	-	S.X.	H.G.	Please select
0.53	69.1	Zm.1436.1.S1_at	CB617096	beta-hexosaminidase beta chain	-	5e-2	At3g55260	HEXO1 (BETA-HEXOSAMINIDASE 1)	S.X.	H.G.	Please select
0.40	48.5	Zm.5825.1.A1_at	AI649790	hypothetical protein LOC100279429	-	1e-2	At1g10390	nucleoporin family protein	S.X.	H.G.	Please select
0.36	41.3	Zm.777.1.S1_a_at	CD442368	hypothetical protein LOC100272376	-	4e-8	At5g63380	4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein	S.X.	H.G.	Please select
0.29	28.1	Zm.14014.1.A1_at	CF050089	NADH-ubiquinone oxidoreductase 23 kDa subunit	-	2e-62	At1g79010	NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.9	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.1	99.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.5	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.1	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.2	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.2	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	759	ZmAffx.485.1.S1_at	AI691349	-	-	8e-1	Atmg00140	-	C.G.	S.X.	Please select
0.03	4e-4	44	Zm.9905.1.A1_at	AY107944.1	IDP680 protein /// hypothetical protein LOC100275890 /// RAB5-interacting protein	-	8e+0	At5g66490	unknown protein	C.G.	S.X.	Please select
0.03	4e-4	44	Zm.9966.1.A1_at	AY107742.1	hypothetical protein LOC100191214	-	1e-42	At2g32980	unknown protein	C.G.	S.X.	Please select
0.04	4e-4	44	Zm.914.1.S1_at	CK368496	B12D protein	-	4e-4	At3g48140	senescence-associated protein, putative	C.G.	S.X.	Please select
0.02	4e-4	44	Zm.804.1.A1_at	CF627442	chaperone protein dnaJ	-	1e-5	At5g48030	GFA2 (GAMETOPHYTIC FACTOR 2)	C.G.	S.X.	Please select
0.03	4e-4	44	Zm.7120.1.S1_a_at	AY105061.1	hypothetical protein LOC100193616	-	2e-6	At1g17880	nascent polypeptide-associated complex (NAC) domain-containing protein / BTF3b-like transcription factor, putative	C.G.	S.X.	Please select
0.03	4e-4	44	Zm.7010.2.A1_at	AY106286.1	-	-	1e-5	At1g56110	NOP56 (Arabidopsis homolog of nucleolar protein Nop56)	C.G.	S.X.	Please select
0.02	4e-4	44	Zm.6495.1.A1_at	BG841953	-	-	1e-2	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please select
0.02	4e-4	44	Zm.6495.1.S1_at	AY105321.1	transcription elongation factor A protein 2	-	1e-2	At2g38560	TFIIS (TRANSCRIPT ELONGATION FACTOR IIS)	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	34	Arabidopsis thaliana	Atmg00140	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.06	1e-3	44	Glycine max	GmaAffx.8999.2.A1_x_at	BI700574	-	-	2e+0	At1g22280	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.04	4e-1	34	Hordeum vulgare	HVSMEk0023G08r2_at	HVSMEk0023G08r2	-	-	9e-1	At3g16970	self-incompatibility protein-related	C.G.	S.X.	Please select
0.04	7e-15	81	Oryza sativa	Os02g0714500	AK066821.1	-	TPR-like domain containing protein	8e-3	At5g65950	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	1e-3	44	Populus trichocarpa	PtpAffx.37401.1.A1_s_at	CV253800	hypothetical protein	-	7e-1	At3g15750	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.07	8e-4	44	Triticum aestivum	TaAffx.30022.1.S1_at	CA630291	-	-	2e+0	At3g54290	-	C.G.	S.X.	Please select
0.05	1e-2	38	Vitis vinifera	1615678_at	CF202538.1	-	-	3e-19	At1g64520	RPN12a (Regulatory Particle non-ATPase 12a)	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage