Gene omics information

Query gene ID	ZmAffx.476.1.A1_at
Gene name	hypothetical protein LOC100272823
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.73	89.9	ZmAffx.476.1.A1_at	AI677574	hypothetical protein LOC100272823	-	1e+1	Atcg00800	-	S.X.	H.G.	Please select
0.83	95.6	Zm.3076.1.A1_at	CF624721	mitochondrial import inner membrane translocase subunit Tim10	-	2e-12	At2g29530	mitochondrial import inner membrane translocase (TIM10)	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.717.1.A1_at	AI739812	-	-	8e-1	At3g07565	DNA binding	S.X.	H.G.	Please select
0.50	65.7	Zm.6085.2.A1_a_at	AI759119	hypothetical protein LOC100280198	-	1e+1	At5g53820	unknown protein	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.966.1.A1_at	AI677247	-	-	8e-1	At5g47830	unknown protein	S.X.	H.G.	Please select
0.25	21.3	Zm.10501.1.S1_at	BQ485592	hypothetical protein LOC100194407	-	7e+0	At5g66005	Expressed protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
19.9	99.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.0	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.9	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.476.1.S1_at	AI677574	-	-	1e+1	Atcg00800	-	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.755.1.S1_at	AI745946	-	-	1e-27	Atcg00800	-	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.755.1.A1_s_at	AI745946	-	-	1e-27	Atcg00800	-	C.G.	S.X.	Please select
0.03	1e+0	32	ZmAffx.1522.1.S1_s_at	11990232-59	-	-	3e-38	Atcg00800	-	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.857.1.S1_at	CF624024	-	-	1e-1	At5g50150	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.8646.1.A1_at	BM349186	-	-	7e-2	At4g39680	SAP domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5135.1.A1_at	AI600980	Dual-specificity protein-like phosphatase 3	-	2e-5	At3g10940	protein phosphatase-related	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.3961.1.S1_at	CK370362	hypothetical protein LOC100272531	-	3e-7	At1g70290	ATTPS8	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.3550.1.A1_at	CF624216	sucrose synthase1	-	8e-12	At3g43190	SUS4	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	Atcg00800	-	-	encodes a chloroplast ribosomal protein S3, a constituent of the small subunit of the ribosomal complex	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	GmaAffx.83407.1.S1_at	BG359669	-	-	9e-7	At3g46550	SOS5 (salt overly sensitive 5)	C.G.	S.X.	Please select
0.03	2e+0	32	Hordeum vulgare	Contig4345_at	Contig4345	-	-	1e+0	At2g41360	-	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	Os08g0181000	9636.m00777	-	-	2e+0	At2g40205	60S ribosomal protein L41 (RPL41C)	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e+0	32	Populus trichocarpa	PtpAffx.214521.1.S1_at	pmrna28232	hypothetical protein	-	3e-2	At5g25340	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	8e-1	34	Triticum aestivum	TaAffx.109083.1.S1_at	CA680397	-	-	4e-1	At5g43150	unknown protein	C.G.	S.X.	Please select
0.04	1e-2	38	Vitis vinifera	1613525_at	BQ800604	hypothetical protein LOC100241399	-	7e-5	At4g16835	pentatricopeptide (PPR) repeat-containing protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage