Gene omics information

Query gene ID	ZmAffx.475.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.61	79.5	ZmAffx.475.1.S1_at	AI677510	-	-	2e-1	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1405.1.S1_at	40794996-80	-	-	0	Atmg00510	-	S.X.	H.G.	Please select
0.80	94.0	Zm.13136.1.A1_at	CA404810	hypothetical protein LOC100191921	-	4e+0	At4g32900	aminoacyl-tRNA hydrolase	S.X.	H.G.	Please select
0.71	88.2	Zm.3876.1.S1_at	AY111960.1	hypothetical protein LOC100278092	-	5e+0	At4g17030	ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1)	S.X.	H.G.	Please select
0.55	71.6	Zm.13055.2.S1_at	CA403909	nuclear transcription factor Y subunit B-3	-	6e-19	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	S.X.	H.G.	Please select
0.46	58.4	Zm.4733.1.A1_at	CD441088	hypothetical protein LOC100193930	-	2e-14	At1g76900	AtTLP1 (TUBBY LIKE PROTEIN 1)	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
46.6	100.0	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.7	99.7	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.4	99.6	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.9	99.4	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.475.1.A1_at	AI677510	-	-	2e-1	At1g74210	glycerophosphoryl diester phosphodiesterase family protein	C.G.	S.X.	Please select
0.05	1e+0	32	Zm.9512.1.A1_at	BM269465	hypothetical protein LOC100274102	-	9e+0	At4g10150	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.8884.1.A1_at	CF018008	hypothetical protein LOC100280133	-	3e-9	At3g48890	ATMP2	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9340.1.A1_at	BM268171	-	-	1e+0	At1g76540	CDKB2	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.8824.1.A1_at	BM347277	FK506-binding protein 4	-	2e-6	At3g55520	immunophilin, putative / FKBP-type peptidyl-prolyl cis-trans isomerase, putative	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.856.1.A1_a_at	U82815.1	nucleolar histone deacetylase HD2-p39	-	1e-2	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.856.1.A1_x_at	U82815.1	nucleolar histone deacetylase HD2-p39	-	1e-2	At5g22650	HD2B (HISTONE DEACETYLASE 2B)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4793.2.A1_at	CF049001	hypothetical protein LOC100193728	-	1e-40	At1g19880	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4793.2.S1_at	CF049001	Hypothetical protein LOC100193728	-	1e-40	At1g19880	regulator of chromosome condensation (RCC1) family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Arabidopsis thaliana	At1g74210	843761	glycerophosphoryl diester phosphodiesterase family protein	F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:vacuole;BOMPFAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.2609.2.A1_at	AW311028	-	-	3e-9	At5g11170	ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding	C.G.	S.X.	Please select
0.05	2e+0	32	Hordeum vulgare	Contig20037_at	Contig20037	-	-	3e+0	At3g47630	-	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os08g0238600	AK066677.1	-	-	2e+0	At3g23570	dienelactone hydrolase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	4e+0	32	Populus trichocarpa	PtpAffx.70153.1.A1_at	CV230079	-	-	5e-8	At1g17820	phosphoinositide binding	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.52790.1.S1_at	CA701221	-	-	4e+0	At4g17850	-	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1606889_at	CA817233	-	-	4e+0	At1g69210	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage