Gene omics information

Query gene ID	ZmAffx.397.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.397.1.S1_at	AI676825	-	-	3e+0	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	S.X.	H.G.	Please select
0.80	94.0	Zm.5800.1.S1_at	CK394709	fiber protein Fb11	-	1e+0	At3g09770	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.73	89.9	Zm.5240.1.S1_a_at	CF637178	hypothetical protein LOC100272335	-	1e-70	At5g22440	60S ribosomal protein L10A (RPL10aC)	S.X.	H.G.	Please select
0.61	79.5	Zm.6564.1.A1_at	AW231699	hypothetical protein LOC100272535	-	2e+0	At4g34850	chalcone and stilbene synthase family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.1373.1.A1_at	CF623658	wound/stress protein	-	9e+0	At5g37800	basic helix-loop-helix (bHLH) family protein	S.X.	H.G.	Please select
0.44	55.7	Zm.6904.1.S1_at	AY106446.1	hypothetical protein LOC100273500	-	6e-24	At5g37020	ARF8 (AUXIN RESPONSE FACTOR 8)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
22.7	99.5	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.2	99.3	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.9	99.2	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.4	99.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.397.1.A1_at	AI676825	-	-	3e+0	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.3978.1.A1_at	BQ538157	-	-	3e-17	At1g70320	UPL2 (UBIQUITIN-PROTEIN LIGASE 2)	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.3978.1.A1_a_at	BQ538157	-	-	3e-17	At1g70320	UPL2 (UBIQUITIN-PROTEIN LIGASE 2)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.13184.1.S1_at	CA409097	-	-	2e-1	At2g20620	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.12595.1.S1_at	BG266819	-	-	1e-7	At1g09620	ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1048.1.A1_at	AI881798	-	-	2e-1	At2g41100	TCH3 (TOUCH 3)	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1048.1.S1_at	AI881798	-	-	2e-1	At2g41100	TCH3 (TOUCH 3)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5953.1.A1_at	BM334343	hypothetical protein LOC100280427	-	2e+0	At5g65130	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5904.1.A1_at	AW091094	hypothetical protein LOC100278561	-	2e-5	At2g21600	ATRER1B	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g63870	836507	PP7 (SERINE/THREONINE PHOSPHATASE 7)	Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.C3000180_at	PsAffx.C3000180	-	-	1e-3	At2g47950	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HW09I06u_at	HW09I06u	-	-	1e-2	At2g28090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.7146.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-2	40	Populus trichocarpa	PtpAffx.214242.1.S1_at	pmrna27706	hypothetical protein	-	4e+0	At5g47180	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.26389.1.S1_at	CA689339	-	-	3e+0	Atcg00330	-	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1609023_at	CB974793	-	-	1e+0	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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