Gene omics information

Query gene ID	ZmAffx.397.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.76	91.1	ZmAffx.397.1.A1_at	AI676825	-	-	3e+0	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	S.X.	H.G.	Please select
0.77	92.1	Zm.10401.1.S1_at	CO524902	glyoxylate reductase	-	3e-12	At1g79870	oxidoreductase family protein	S.X.	H.G.	Please select
0.69	86.5	ZmAffx.944.1.S1_at	AI820414	-	-	2e-10	At3g57150	NAP57 (Arabidopsis thaliana homologue of NAP57)	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.902.1.S1_at	AI770904	hypothetical protein LOC100191467	-	3e+0	At4g16640	matrix metalloproteinase, putative	S.X.	H.G.	Please select
0.64	81.7	ZmAffx.890.1.S1_at	AI770846	protein dimerization	-	3e+0	At5g37240	unknown protein	S.X.	H.G.	Please select
0.59	76.1	Zm.4604.1.A1_at	CD959559	-	-	5e+0	At5g37220	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.58	75.1	Zm.8795.1.A1_a_at	BM337357	-	-	5e+0	At5g66550	Maf family protein	S.X.	H.G.	Please select
0.57	75.1	ZmAffx.830.1.S1_at	AI770534	-	-	6e+0	At5g40930	TOM20-4 (TRANSLOCASE OF OUTER MEMBRANE 20-4)	S.X.	H.G.	Please select
0.56	74.4	Zm.4250.1.A1_at	T18710	autophagy-related 3	-	8e-13	At5g61500	ATG3	S.X.	H.G.	Please select
0.54	69.8	ZmAffx.937.1.S1_at	AI820257	-	-	8e+0	At4g19620	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.9	99.8	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data
13.4	98.8	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8	96.6	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM206297	Lower pulvinus 30 min total RNA biorep 1	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
3.8	95.5	GSM202283	Mo17xB73 11-day seedling aerial tissue biological replicate 2	GSE8174	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Seedling data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.397.1.S1_at	AI676825	-	-	3e+0	At5g63870	PP7 (SERINE/THREONINE PHOSPHATASE 7)	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.3978.1.A1_at	BQ538157	-	-	3e-17	At1g70320	UPL2 (UBIQUITIN-PROTEIN LIGASE 2)	C.G.	S.X.	Please select
0.01	3e-1	34	Zm.3978.1.A1_a_at	BQ538157	-	-	3e-17	At1g70320	UPL2 (UBIQUITIN-PROTEIN LIGASE 2)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.13184.1.S1_at	CA409097	-	-	2e-1	At2g20620	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.12595.1.S1_at	BG266819	-	-	1e-7	At1g09620	ATP binding / aminoacyl-tRNA ligase/ leucine-tRNA ligase/ nucleotide binding	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1048.1.A1_at	AI881798	-	-	2e-1	At2g41100	TCH3 (TOUCH 3)	C.G.	S.X.	Please select
0.04	5e+0	30	ZmAffx.1048.1.S1_at	AI881798	-	-	2e-1	At2g41100	TCH3 (TOUCH 3)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5953.1.A1_at	BM334343	hypothetical protein LOC100280427	-	2e+0	At5g65130	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5904.1.A1_at	AW091094	hypothetical protein LOC100278561	-	2e-5	At2g21600	ATRER1B	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g63870	836507	PP7 (SERINE/THREONINE PHOSPHATASE 7)	Encodes a nuclear localized serine/threonine phosphatase that appears to be regulated by redox activity and is a positive regulator of cryptochrome mediated blue light signalling.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.C3000180_at	PsAffx.C3000180	-	-	1e-3	At2g47950	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HW09I06u_at	HW09I06u	-	-	1e-2	At2g28090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.04	2e+0	34	Oryza sativa	OsAffx.7146.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	2e-2	40	Populus trichocarpa	PtpAffx.214242.1.S1_at	pmrna27706	hypothetical protein	-	4e+0	At5g47180	vesicle-associated membrane family protein / VAMP family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.26389.1.S1_at	CA689339	-	-	3e+0	Atcg00330	-	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1609023_at	CB974793	-	-	1e+0	At3g57040	ARR9 (RESPONSE REGULATOR 9)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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