Gene omics information

Query gene ID	ZmAffx.388.1.A1_at
Gene name	hypothetical protein LOC100279879
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.388.1.A1_at	AI673984	hypothetical protein LOC100279879	-	3e+0	At5g18270	ANAC087	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.372.1.A1_at	AI673888	anther-specific protein SF18	-	8e-1	At3g59680	unknown protein	S.X.	H.G.	Please select
0.04	1.5	Zm.2768.1.A1_at	AW067159	Hypothetical protein LOC100193535	-	1e+0	At5g04760	myb family transcription factor	S.X.	H.G.	Please select
0.01	0.3	Zm.14696.2.A1_a_at	AW507051	ribosome biogenesis protein NEP1	-	4e+0	At5g55990	CBL2 (CALCINEURIN B-LIKE 2)	S.X.	H.G.	Please select
0.00	0.1	Zm.16923.3.A1_at	BQ619322	chlorophyll a-b binding protein 2	-	2e-50	At2g34430	LHB1B1	S.X.	H.G.	Please select
0.00	0.1	Zm.5358.1.A1_at	CF003205	ras-related protein Rab11D	-	9e-1	At2g01250	60S ribosomal protein L7 (RPL7B)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
53.8	100.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
44.0	100.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.7	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.4	97.0	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
2.4	92.2	GSM206316	Upper pulvinus 60 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.3	91.7	GSM206314	Upper pulvinus 15 min total RNA biorep 2	GSE8320	Transcriptional and translational gene regulation in the maize pulvinus
2.0	90.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.388.1.S1_at	AI673984	-	-	3e+0	At5g18270	ANAC087	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.4813.1.A1_at	CD958936	hypothetical protein LOC100276338	-	5e-1	At1g35537	-	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.4813.1.S1_at	CD977978	-	-	5e-1	At1g35537	-	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.6732.1.S1_s_at	AF440221.1	HMG-like nucleosome/chromatin assembly factor D	-	3e-11	At1g20696	HMGB3 (HIGH MOBILITY GROUP B 3)	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.3447.1.A1_at	BM379914	acid phosphatase/vanadium-dependent haloperoxidase related	-	2e+0	At5g26130	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.14710.1.S1_at	AY232823.1	nucleosome/chromatin assembly factor group A	-	1e-5	At4g26110	NAP1	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.13764.1.A1_at	CD984379	hypothetical protein LOC100273409	-	1e+0	At1g49015	eukaryotic translation initiation factor-related	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9980.1.A1_at	BM331957	-	-	4e+0	At4g10480	nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.9778.1.A1_at	BM338606	outer envelope protein	-	3e-3	At2g43950	OEP37	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At5g18270	831945	ANAC087	F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:cellular_component unknown;P	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	3e-1	36	Glycine max	GmaAffx.90724.1.S1_at	CF806449	-	-	3e+0	At5g44130	FLA13 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 13 PRECURSOR)	C.G.	S.X.	Please select
0.04	1e-1	36	Hordeum vulgare	HY06F11u_at	HY06F11u	-	-	9e-1	At3g51300	ROP1 (RHO-RELATED PROTEIN FROM PLANTS 1)	C.G.	S.X.	Please select
0.02	2e+0	34	Oryza sativa	Os12g0541400	BQ907958	-	Hypothetical protein	3e+0	At5g01300	phosphatidylethanolamine-binding family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.25638.1.S1_a_at	CV244998	hypothetical protein	-	4e-16	At4g17310	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.110205.1.S1_at	CA662153	-	-	4e+0	At5g05790	myb family transcription factor	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1608396_at	CF371973	hypothetical protein LOC100255995	-	4e-6	At1g19130	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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