Gene omics information

Query gene ID	ZmAffx.355.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.74	90.3	ZmAffx.355.1.A1_at	AI670542	-	-	3e+0	At1g77890	unknown protein	S.X.	H.G.	Please select
0.39	45.6	ZmAffx.32.1.S1_at	AI657422	-	-	3e+0	At1g12020	unknown protein	S.X.	H.G.	Please select
0.36	41.3	ZmAffx.62.1.A1_at	AI665108	coronatine-insensitive protein 1	-	3e+0	At2g01370	DNA-binding storekeeper protein-related	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.651.1.A1_at	AI715079	-	-	1e+1	At5g39580	peroxidase, putative	S.X.	H.G.	Please select
0.20	14.2		-	-	-	0			S.X.	H.G.	Please select
0.12	5.9	ZmAffx.306.1.A1_at	AI670439	-	-	2e+0	At1g36020	-	S.X.	H.G.	Please select
0.10	4.6	Zm.9557.1.A1_at	BI423687	Glycine cleavage H-protein	-	2e-2	At1g32470	glycine cleavage system H protein, mitochondrial, putative	S.X.	H.G.	Please select
0.06	2.3	Zm.9142.1.A1_at	BM341036	-	-	4e-1	At3g23170	unknown protein	S.X.	H.G.	Please select
0.06	2.3	ZmAffx.809.1.S1_at	AI770393	protein binding protein	-	4e+0	At4g25080	CHLM (magnesium-protoporphyrin IX methyltransferase)	S.X.	H.G.	Please select
0.05	1.9	ZmAffx.723.1.S1_at	AI739914	-	-	8e-1	At3g07150	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
60.1	100.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
34.3	99.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	676	ZmAffx.355.1.S1_at	AI670542	-	-	3e+0	At1g77890	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.12050.1.A1_at	BM416823	early flowering 4	-	1e+0	At5g16030	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.2189.1.A1_at	BM074210	hypothetical protein LOC100276717	-	3e-14	At1g21065	unknown protein	C.G.	S.X.	Please select
0.01	4e+0	30	Zm.798.2.S1_at	CO528512	hypothetical protein LOC100194211	-	2e-13	At4g37470	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.6882.1.A1_s_at	AI621509	hypothetical protein LOC100191222 /// hypothetical protein LOC100193000 /// triosephosphate isomerase	-	7e-7	At2g21170	TIM (TRIOSEPHOSPHATE ISOMERASE)	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.6882.1.S1_at	AY109336.1	-	-	7e-7	At2g21170	TIM (TRIOSEPHOSPHATE ISOMERASE)	C.G.	S.X.	Please select
0.01	4e+0	30	Zm.6486.1.S1_at	CO531538	hypothetical protein LOC100273633	-	7e-29	At3g54180	CDKB1	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.5434.1.S1_at	BM073094	50S ribosomal protein L6	-	2e-18	At1g05190	emb2394 (embryo defective 2394)	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.5434.1.S1_s_at	BM073094	IDP2469 protein /// 50S ribosomal protein L6 /// 50S ribosomal protein L6	-	2e-18	At1g05190	emb2394 (embryo defective 2394)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At1g77890	844125	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PBOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	2e-1	36	Glycine max	PsAffx.CL1841Contig1_at	PsAffx.CL1841Contig1	-	-	2e+0	At5g66390	peroxidase 72 (PER72) (P72) (PRXR8)	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	HVSMEl0013J10r2_at	HVSMEl0013J10r2	-	-	7e-2	At5g25940	early nodulin-related	C.G.	S.X.	Please select
0.06	3e-1	36	Oryza sativa	Os09g0377700	9637.m01809	-	-	1e-1	At3g17940	aldose 1-epimerase family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	9e-1	34	Populus trichocarpa	Ptp.899.1.S1_at	CK089331	laccase 90b /// laccase 90d	-	1e-3	At5g05390	LAC12 (laccase 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	Ta.11028.1.A1_x_at	BQ168407	-	-	1e+1	At5g64800	CLE21 (CLAVATA3/ESR-RELATED 21)	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1615752_at	CF212949	hypothetical protein LOC100241690	-	4e+0	At3g53670	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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