Gene omics information

Query gene ID	ZmAffx.33.1.A1_at
Gene name	t-snare
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.48	61.3	ZmAffx.33.1.A1_at	AI657429	t-snare	-	2e-1	At4g00890	proline-rich family protein	S.X.	H.G.	Please select
0.86	96.3	Zm.13452.2.A1_at	AY105619.1	zinc transporter 4	-	5e-4	At3g12750	ZIP1 (ZINC TRANSPORTER 1 PRECURSOR)	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.715.1.A1_s_at	AI739762	-	-	2e-1	At1g04670	unknown protein	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.195.1.S1_at	AI668458	-	-	1e+1	At5g21005	unknown protein	S.X.	H.G.	Please select
0.40	48.5	Zm.10252.1.A1_at	AY108029.1	hypothetical protein LOC100279693	-	2e+0	At5g02750	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.40	48.5	Zm.1039.2.A1_at	CF384547	-	-	2e+0	At3g59270	syntaxin-related family protein	S.X.	H.G.	Please select
0.27	24.6	ZmAffx.937.1.S1_at	AI820257	-	-	8e+0	At4g19620	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.2	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.5	98.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.5	95.1	GSM253281	ZM_8d_SG200_3Alu_II	GSE10023	Maize gene expression during infection with Ustilago maydis

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	801	ZmAffx.33.1.S1_at	AI657429	-	-	2e-1	At4g00890	proline-rich family protein	C.G.	S.X.	Please select
0.22	7e-58	222	Zm.13196.1.S1_at	AY105985.1	t-snare	-	6e-2	At5g59210	myosin heavy chain-related	C.G.	S.X.	Please select
0.47	8e-33	139	Zm.17309.1.A1_s_at	CK369677	t-snare	-	4e+0	At5g64680	unknown protein	C.G.	S.X.	Please select
0.47	8e-33	139	Zm.17309.1.A1_at	CK369677	-	-	4e+0	At5g64680	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.2167.1.A1_at	AI714599	-	-	9e-1	At5g16780	DOT2 (DEFECTIVELY ORGANIZED TRIBUTARIES 2)	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.19203.1.S1_at	CO520849	hypothetical protein LOC100193957	-	1e-5	At3g07220	transcriptional activator, putative	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.14362.1.A1_at	CO526845	hypothetical protein LOC100216856	-	8e-4	At3g15354	SPA3 (SPA1-RELATED 3)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.8459.1.A1_at	BM078128	cell division control protein 50	-	1e-9	At1g16360	LEM3 (ligand-effect modulator 3) family protein / CDC50 family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.5647.1.S1_at	AY122272.1	SET domain-containing protein SET104	-	2e+0	At1g02380	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Arabidopsis thaliana	At4g00890	826266	proline-rich family protein	Encodes a putative glycosyl hydrolase family 10 protein (xylanase).	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	PsAffx.C27000001_at	PsAffx.C27000001	-	-	2e-1	At5g06070	RBE (RABBIT EARS)	C.G.	S.X.	Please select
0.09	5e-25	113	Hordeum vulgare	Contig12377_at	Contig12377	-	-	2e-1	At5g59210	myosin heavy chain-related	C.G.	S.X.	Please select
0.10	2e-15	83	Oryza sativa	Os03g0268100	AK065357.1	-	Conserved hypothetical protein	6e-2	At5g59210	myosin heavy chain-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	Ptp.1709.1.A1_at	CK093124	hypothetical protein	-	5e+0	At5g59360	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.68	1e-76	286	Triticum aestivum	TaAffx.85144.1.S1_at	CA625231	-	-	3e-1	At4g00890	proline-rich family protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1620636_at	CD007995	-	-	4e-25	At4g00090	transducin family protein / WD-40 repeat family protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage