Gene omics information

Query gene ID	ZmAffx.282.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.67	85.8	ZmAffx.282.1.S1_at	AI670410	-	-	3e+0	At5g09520	hydroxyproline-rich glycoprotein family protein	S.X.	H.G.	Please select
0.59	76.1	ZmAffx.732.1.S1_at	AI740043	-	-	5e+0	At3g16640	TCTP (TRANSLATIONALLY CONTROLLED TUMOR PROTEIN)	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.751.1.A1_at	AI745874	-	-	1e+1	At5g44990	-	S.X.	H.G.	Please select
0.38	44.2	Zm.1094.1.A1_at	BM339500	-	-	2e-5	At5g26210	AL4 (ALFIN-LIKE 4)	S.X.	H.G.	Please select
0.21	15.5	ZmAffx.1081.1.S1_at	AI948368	-	-	1e+1	At5g23950	C2 domain-containing protein	S.X.	H.G.	Please select
0.09	4.0	Zm.3610.1.A1_at	AW065778	hypothetical protein LOC100276901	-	2e+0	At4g04360	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
45.8	100.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.3	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.282.1.A1_at	AI670410	-	-	3e+0	At5g09520	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
1.00	0	807	ZmAffx.282.1.A1_a_at	AI670410	-	-	3e+0	At5g09520	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.30	3e-54	210	ZmAffx.282.2.A1_at	AI670245	-	-	3e+0	At5g09520	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.40	3e-54	210	ZmAffx.282.2.S1_at	AI670245	-	-	3e+0	At5g09520	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6257.1.A1_at	AY110132.1	shikimate biosynthesis protein aroDE	-	7e+0	At5g37820	NIP4	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.3665.1.S1_at	D88451.1	aldehyde oxidase	-	4e-2	At3g43600	AAO2 (ALDEHYDE OXIDASE 2)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.13192.1.S1_at	CK394774	metal-dependent phosphohydrolase, HD subdomain	-	2e-4	At1g17330	metal-dependent phosphohydrolase HD domain-containing protein-related	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.10852.1.A1_at	BM078475	-	-	5e-1	At2g35240	plastid developmental protein DAG, putative	C.G.	S.X.	Please select
0.01	2e+1	28	ZmAffx.1215.1.S1_s_at	6273844	-	-	9e-1	At5g64850	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At5g09520	830811	hydroxyproline-rich glycoprotein family protein	F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.14085.1.A1_at	BI968896	-	-	3e+0	At5g43410	ethylene-responsive factor, putative	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	HT08E21u_at	HT08E21u	-	-	3e+0	At3g03840	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.02	6e+0	32	Oryza sativa	Os05g0562000	AK066149.1	-	Hypothetical protein	5e-1	At4g28290	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.150591.1.S1_at	CK107057	hypothetical protein	-	1e+0	At5g01570	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.86551.1.S1_x_at	CA605918	-	-	2e+0	At5g15265	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1617691_at	CF513924	-	-	1e+0	At1g52140	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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