Gene omics information

Query gene ID	ZmAffx.278.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.63	81.1	ZmAffx.278.1.A1_at	AI670406	-	-	8e-1	At1g73875	endonuclease/exonuclease/phosphatase family protein	S.X.	H.G.	Please select
0.48	61.3	ZmAffx.960.1.A1_at	AI833639	hypothetical protein LOC100273178	-	3e+0	At2g19640	ASHR2 (ASH1-RELATED PROTEIN 2)	S.X.	H.G.	Please select
0.47	59.9	ZmAffx.96.1.S1_at	AI665410	-	-	1e+1	At4g39130	dehydrin family protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.195.1.S1_at	AI668458	-	-	1e+1	At5g21005	unknown protein	S.X.	H.G.	Please select
0.33	36.0	ZmAffx.33.1.A1_at	AI657429	t-snare	-	2e-1	At4g00890	proline-rich family protein	S.X.	H.G.	Please select
0.30	29.8	Zm.622.1.S1_at	AF342809.1	tonoplast membrane integral protein ZmTIP3-2	-	4e-2	At2g01340	unknown protein	S.X.	H.G.	Please select
0.27	24.6	ZmAffx.715.1.A1_s_at	AI739762	-	-	2e-1	At1g04670	unknown protein	S.X.	H.G.	Please select
0.25	21.3	Zm.16180.1.A1_at	AW091200	-	-	5e-2	At2g28440	proline-rich family protein	S.X.	H.G.	Please select
0.21	15.5	ZmAffx.937.1.S1_at	AI820257	-	-	8e+0	At4g19620	unknown protein	S.X.	H.G.	Please select
0.19	12.8	Zm.914.1.S1_at	CK368496	B12D protein	-	4e-4	At3g48140	senescence-associated protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
29.0	99.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.6	99.5	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.7	99.5	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.2	99.1	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.278.1.S1_at	AI670406	-	-	8e-1	At1g73875	endonuclease/exonuclease/phosphatase family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.6739.2.S1_a_at	BU582158	ABI3-interacting protein 2	-	5e-5	At5g48385	-	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.3707.1.A1_at	AY107773.1	vacuolar cation/proton exchanger 2	-	1e-4	At3g13320	CAX2 (CATION EXCHANGER 2)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.2591.3.A1_x_at	CF003515	autophagy-related 8b	-	3e-48	At1g62040	ATG8C (autophagy 8c)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.17703.1.A1_at	CK369722	-	-	5e-3	At5g23950	C2 domain-containing protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.17527.1.A1_at	CO534103	hypothetical protein LOC100272457	-	2e+1	At5g51520	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.10125.1.A1_a_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.10125.1.A1_x_at	CF628795	cytidine/deoxycytidylate deaminase family protein	-	5e-1	At5g29807	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	28	ZmAffx.406.10.A1_at	AI670244	-	-	1e+1	At5g14320	30S ribosomal protein S13, chloroplast (CS13)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	8e-1	34	Arabidopsis thaliana	At1g73875	843724	endonuclease/exonuclease/phosphatase family protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e-1	36	Glycine max	HgAffx.14517.1.S1_at	CB379317	-	-	2e+0	At5g53880	unknown protein	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	Contig23134_at	Contig23134	-	-	3e+0	At5g02650	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	32	Oryza sativa	Os12g0460400	9640.m02640	-	-	1e-3	At1g70470	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.203466.1.S1_at	pmrna6904	hypothetical protein	-	2e-1	At2g02470	AL6 (ALFIN-LIKE 6)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.55626.2.S1_at	CA663457	-	-	1e+1	At5g63168	unknown protein	C.G.	S.X.	Please select
0.04	1e+1	28	Vitis vinifera	1617627_at	CF568926	-	-	8e-1	At5g67390	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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