Gene omics information

Query gene ID	ZmAffx.273.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.68	86.1	ZmAffx.273.1.A1_at	AI670401	-	-	1e+1	At3g22900	NRPD7	S.X.	H.G.	Please select
0.57	75.1	Zm.10129.1.A1_at	BM267811	N-acetyltransferase	-	2e+1	At5g57750	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.519.1.S1_at	AI711610	Hypothetical protein LOC100193190	-	3e+0	At3g21352	unknown protein	S.X.	H.G.	Please select
0.49	61.9	Zm.1223.1.A1_at	AW018188	-	-	8e-20	At2g34680	AIR9	S.X.	H.G.	Please select
0.48	61.3	ZmAffx.679.1.A1_at	AI734614	Hypothetical protein LOC100191777	-	5e-2	At2g36100	integral membrane family protein	S.X.	H.G.	Please select
0.46	58.4	Zm.10046.1.A1_at	BM379106	-	-	2e-1	At5g13120	peptidyl-prolyl cis-trans isomerase cyclophilin-type family protein	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.19.1.A1_at	AI586648	PWWP domain containing protein	-	1e+1	At1g48745	unknown protein	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.519.1.A1_at	AI711610	hypothetical protein LOC100193190	-	3e+0	At3g21352	unknown protein	S.X.	H.G.	Please select
0.40	48.5	ZmAffx.134.1.S1_at	AI667702	-	-	3e+0	At3g53010	-	S.X.	H.G.	Please select
0.38	44.2	ZmAffx.1325.1.S1_at	40794996-35	-	-	4e-2	At1g49910	WD-40 repeat family protein / mitotic checkpoint protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
53.2	100.0	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.4	99.8	GSM320466	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.7	99.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.2	99.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.5	98.8	GSM320473	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.6	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.273.1.S1_at	AI670401	-	-	1e+1	At3g22900	NRPD7	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.5953.1.A1_at	BM334343	hypothetical protein LOC100280427	-	2e+0	At5g65130	AP2 domain-containing transcription factor, putative	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.6005.1.A1_at	AY108292.1	-	-	5e-1	At4g18500	unknown protein	C.G.	S.X.	Please select
0.03	3e-1	34	Zm.6005.1.S1_a_at	AY108292.1	MYB transcription factor TaMYB1	-	2e+0	At1g29460	auxin-responsive protein, putative	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6832.1.A1_at	AY106208.1	hypothetical protein LOC100192878	-	9e-9	At3g05590	RPL18 (RIBOSOMAL PROTEIN L18)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.19357.1.A1_at	CO533449	pre-mRNA cleavage complex II protein Clp1	-	2e+0	At2g38465	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.18079.1.A1_at	CO526802	hypothetical protein LOC100191747	-	9e-4	At1g50710	unknown protein	C.G.	S.X.	Please select
0.02	2e+1	28	ZmAffx.1358.1.S1_at	40794996-159	-	-	0	Atmg01170	-	C.G.	S.X.	Please select
0.01	2e+1	28	ZmAffx.12.1.S1_at	AY562491.1	kaurene synthase2	-	1e-7	At4g02780	GA1 (GA REQUIRING 1)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	1e+1	30	Arabidopsis thaliana	At3g22900	821862	NRPD7	Non-catalytic subunit specific to DNA-directed RNA polymerase IV; homologous to budding yeast RPB7	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	Gma.13511.1.A1_at	CD399643	-	-	1e+1	At5g24879	unknown protein	C.G.	S.X.	Please select
0.03	6e+0	30	Hordeum vulgare	EBes01_SQ003_K12_at	EBes01_SQ003_K12	-	-	4e+0	At3g09280	unknown protein	C.G.	S.X.	Please select
0.05	4e-1	36	Oryza sativa	OsAffx.11376.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e-1	36	Populus trichocarpa	PtpAffx.221433.1.S1_at	pmrna38318	hypothetical protein	-	2e-1	At5g52990	vesicle-associated membrane protein-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.85628.1.S1_at	CA621029	-	-	5e-1	At1g51090	heavy-metal-associated domain-containing protein	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1610353_at	CF511405	-	-	1e+1	At5g61640	PMSR1 (PEPTIDEMETHIONINE SULFOXIDE REDUCTASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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