Gene omics information

Query gene ID	ZmAffx.238.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	ZmAffx.238.1.A1_at	AI670250	-	-	1e+1	At3g62140	unknown protein	S.X.	H.G.	Please select
0.77	92.1	Zm.4808.1.A1_at	CK827550	-	-	4e-8	At1g16210	unknown protein	S.X.	H.G.	Please select
0.73	89.9	Zm.18990.1.A1_at	CO520764	BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1	-	1e+0	At3g01319	unknown protein	S.X.	H.G.	Please select
0.55	71.6	Zm.2557.2.S1_x_at	AY106871.1	DNA binding protein	-	9e-6	At4g39100	SHL1 (short life)	S.X.	H.G.	Please select
0.39	45.6	Zm.18103.1.A1_at	AY187878.1	nitrate transporter	-	8e-4	At1g32450	NRT1.5 (NITRATE TRANSPORTER 1.5)	S.X.	H.G.	Please select
0.19	12.8	Zm.19111.1.A1_at	CO531150	-	-	4e-4	At3g17940	aldose 1-epimerase family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.8	99.6	GSM320470	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320469	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.9	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.1	99.4	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320465	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.238.1.S1_at	AI670250	-	-	1e+1	At3g62140	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.6051.2.S1_at	AW400198	-	-	8e-1	At2g24060	translation initiation factor 3 (IF-3) family protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.4882.1.S1_at	BE644445	hypothetical protein LOC100193470 /// hypothetical protein LOC100273280 /// yabby15	-	2e-11	At4g00180	YAB3 (YABBY3)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8113.1.S1_at	BM072984	-	-	3e-1	At1g80940	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5935.1.A1_at	CF633631	hypothetical protein LOC100194239	-	2e+0	At3g12260	complex 1 family protein / LVR family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4623.2.S1_at	AI737385	Hypothetical protein LOC100217143	-	2e+0	At1g79850	RPS17 (RIBOSOMAL PROTEIN S17)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.2353.1.S1_a_at	CK369927	hypothetical protein LOC100192021	-	1e-1	At1g18170	immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.14496.1.A1_at	CF014750	sesquiterpene cyclase-like	-	1e+0	At5g46710	zinc-binding family protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zm.10132.1.A1_at	BM381122	seed maturation protein	-	1e+0	At3g10260	reticulon family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At3g62140	825387	unknown protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	PsAffx.C73000045_at	PsAffx.C73000045	-	-	4e+0	At3g55500	ATEXPA16 (ARABIDOPSIS THALIANA EXPANSIN A16)	C.G.	S.X.	Please select
0.04	6e+0	30	Hordeum vulgare	HVSMEf0019M19r2_s_at	HVSMEf0019M19r2	-	-	1e+1	At5g52270	vesicle transport protein-related	C.G.	S.X.	Please select
0.05	2e+1	30	Oryza sativa	OsAffx.7447.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	4e+0	32	Populus trichocarpa	PtpAffx.224099.1.S1_at	pmrna42336	hypothetical protein	-	3e+0	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	8e-1	34	Triticum aestivum	TaAffx.109309.1.S1_at	CA677197	-	-	2e+0	At4g13540	unknown protein	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1610654_at	BQ793239	hypothetical protein LOC100247382	-	6e-2	At3g44950	glycine-rich protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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