Gene omics information

Query gene ID	ZmAffx.224.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.77	92.1	ZmAffx.224.1.A1_at	AI670233	-	-	8e-1	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	S.X.	H.G.	Please select
0.77	92.1	Zm.4625.1.A1_at	AI737394	-	-	8e-1	At1g78630	emb1473 (embryo defective 1473)	S.X.	H.G.	Please select
0.71	88.2	ZmAffx.786.1.A1_at	AI759096	-	-	3e-3	At1g72450	JAZ6 (JASMONATE-ZIM-DOMAIN PROTEIN 6)	S.X.	H.G.	Please select
0.63	81.1	Zm.9891.1.A1_at	BM350582	-	-	1e+0	At5g27290	unknown protein	S.X.	H.G.	Please select
0.59	76.1	ZmAffx.925.1.S1_at	AI795348	-	-	8e-1	At1g43171	unknown protein	S.X.	H.G.	Please select
0.56	74.4	ZmAffx.566.1.A1_at	AI714636	-	-	2e-1	At5g05610	AL1 (ALFIN-LIKE 1)	S.X.	H.G.	Please select
0.51	66.4	Zm.13162.1.A1_at	CO521967	-	-	9e-3	At3g02040	SRG3 (senescence-related gene 3)	S.X.	H.G.	Please select
0.48	61.3	Zm.17591.2.S1_at	CK347917	-	-	2e-52	At1g14670	endomembrane protein 70, putative	S.X.	H.G.	Please select
0.46	58.4	Zm.18993.1.S1_at	CO528827	-	-	3e-3	At2g10950	BSD domain-containing protein	S.X.	H.G.	Please select
0.44	55.7	Zm.9555.2.A1_at	CK347442	-	-	3e+0	At2g22241	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.3	99.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.0	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.8	99.2	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.1	98.6	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.224.1.S1_at	AI670233	-	-	8e-1	At5g06770	KH domain-containing protein / zinc finger (CCCH type) family protein	C.G.	S.X.	Please select
0.02	9e-2	36	Zm.3312.1.S1_at	AY108940.1	hypothetical protein LOC100193364	-	5e-119	At4g29040	RPT2a (regulatory particle AAA-ATPase 2a)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.8879.1.A1_at	BM334135	nudix hydrolase 13	-	3e-9	At3g12600	atnudt16 (Arabidopsis thaliana Nudix hydrolase homolog 16)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6827.1.A1_at	AY103565.1	eukaryotic initiation factor 5C CG2922-PF, isoform F	-	9e-38	At5g36230	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.548.1.S1_at	AF244684.1	glutathione transferase19	-	1e-1	At1g10370	ERD9 (EARLY-RESPONSIVE TO DEHYDRATION 9)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4743.1.S1_at	AI738395	-	-	7e+0	At5g28463	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.402.1.S1_a_at	AF072326.1	endo-1,3-1,4-beta-D-glucanase	-	8e+0	At5g18690	AGP25 (ARABINOGALACTAN PROTEINS 25)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4077.1.S1_x_at	AY105154.1	-	-	9e-7	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4077.1.S1_at	AY105154.1	-	-	9e-7	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	8e-1	34	Arabidopsis thaliana	At5g06770	830566	KH domain-containing protein / zinc finger (CCCH type) family protein	F:transcription factor activity, nucleic acid binding;P:regulation of transcription;C:unknown;MPOF	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	4e+0	32	Glycine max	PsAffx.C202000015_at	PsAffx.C202000015	-	-	2e+0	At2g39720	RHC2A	C.G.	S.X.	Please select
0.05	6e+0	30	Hordeum vulgare	rbaal21l22_s_at	rbaal21l22	-	-	6e-1	At1g16520	unknown protein	C.G.	S.X.	Please select
0.03	2e+0	34	Oryza sativa	OsAffx.28360.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.07	1e+0	34	Populus trichocarpa	PtpAffx.121473.1.A1_at	CV238631	-	-	1e-1	At4g27390	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	Ta.25096.2.S1_x_at	CA640556	-	-	6e-2	At3g49560	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1619561_at	CB348102	hypothetical protein LOC100254946	-	4e+0	At4g33865	40S ribosomal protein S29 (RPS29C)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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