Gene omics information

Query gene ID	ZmAffx.196.1.A1_at
Gene name	hypothetical protein LOC100278421
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.53	69.1	ZmAffx.196.1.A1_at	AI668462	hypothetical protein LOC100278421	-	5e-5	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	S.X.	H.G.	Please select
0.50	65.7	Zm.6456.1.S1_at	AY107553.1	-	-	2e+0	At4g11175	translation initiation factor IF-1, chloroplast, putative	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.743.1.A1_at	AI745735	-	-	8e-1	At4g28170	unknown protein	S.X.	H.G.	Please select
0.42	51.3	Zm.3227.1.A1_at	CA399429	-	-	2e-8	At3g18290	EMB2454 (embryo defective 2454)	S.X.	H.G.	Please select
0.35	38.9	Zm.16891.2.A1_at	BM267412	proteasome subunit alpha type 5	-	5e-51	At1g53850	PAE1	S.X.	H.G.	Please select
0.27	24.6	Zm.261.1.S1_at	CD996491	translocon at outer membrane of chloroplast34	-	1e-2	At5g05000	TOC34 (TRANSLOCON AT THE OUTER ENVELOPE MEMBRANE OF CHLOROPLASTS 34)	S.X.	H.G.	Please select
0.22	16.9	ZmAffx.227.1.S1_at	AI670239	-	-	3e+0	At5g50410	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.8	99.2	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.9	99.1	GSM320445	protocol: mRNA - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM258194	Oh43 11-day seedling aerial tissue biological replicate 3	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis
6.4	97.5	GSM258207	Wf9 11-day seedling aerial tissue biological replicate 3	GSE10237	Gene expression variation among eight maize inbreds
6.3	97.4	GSM258201	Wf9 11-day seedling aerial tissue biological replicate 1	GSE10237	Gene expression variation among eight maize inbreds
6.2	97.4	GSM253270	ZM_4.5d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
6.2	97.4	GSM258204	Wf9 11-day seedling aerial tissue biological replicate 2	GSE10237	Gene expression variation among eight maize inbreds
5.7	97.2	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.0	96.7	GSM258176	Oh43 11-day seedling aerial tissue biological replicate 1	GSE10236	Similar patterns of additive and non-additive gene expression in maize hybrids with varying levels of heterosis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.196.1.S1_at	AI668462	-	-	5e-5	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select
0.03	2e-2	38	Zm.5270.1.S1_at	CF623217	bax inhibitor 1	-	2e-3	At5g47120	ATBI1 (BAX INHIBITOR 1)	C.G.	S.X.	Please select
0.03	9e-2	36	Zm.612.1.A1_at	AF326500.1	tonoplast membrane integral protein ZmTIP1-2	-	3e-8	At3g26520	TIP2 (TONOPLAST INTRINSIC PROTEIN 2)	C.G.	S.X.	Please select
0.01	9e-2	36	Zm.16505.1.A2_at	CF633865	-	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.01	9e-2	36	Zm.16505.1.A1_at	BG841073	hypothetical protein LOC100272368	-	0	At5g56030	HSP81-2 (HEAT SHOCK PROTEIN 81-2)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.7459.1.A1_at	AY105544.1	Hypothetical protein LOC100193143	-	6e-1	At2g44790	UCC2 (UCLACYANIN 2)	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.6076.1.A1_a_at	AY111015.1	COX VIIa-like protein	-	3e-1	At2g21195	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.6076.1.S1_at	AY111015.1	-	-	3e-1	At2g21195	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.3900.1.S1_at	BM073698	-	-	9e-56	At2g07690	minichromosome maintenance family protein / MCM family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	5e-5	48	Arabidopsis thaliana	At3g15820	820825	phosphatidic acid phosphatase-related / PAP2-related	F:molecular_function unknown;P:biological_process unknown;C:unknown;POB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+0	34	Glycine max	PsAffx.CL925Contig1_at	PsAffx.CL925Contig1	-	-	1e+0	At2g24290	unknown protein	C.G.	S.X.	Please select
0.25	6e-37	153	Hordeum vulgare	Contig13481_at	Contig13481	-	-	1e-4	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select
0.39	2e-36	153	Oryza sativa	Os06g0607100	AK071250.1	-	Conserved hypothetical protein	4e-8	At3g15820	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	7e-2	38	Populus trichocarpa	PtpAffx.214350.1.S1_s_at	pmrna27909	hypothetical protein	-	2e+0	At3g12530	PSF2	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.23	4e-24	111	Triticum aestivum	Ta.21752.1.S1_at	CK210476	-	-	6e-4	At3g15830	phosphatidic acid phosphatase-related / PAP2-related	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1622645_at	CF208259	hypothetical protein LOC100245405	-	1e-83	At1g01050	AtPPa1 (Arabidopsis thaliana pyrophosphorylase 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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