Gene omics information

Query gene ID	ZmAffx.195.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	92.8	ZmAffx.195.1.A1_at	AI668458	-	-	1e+1	At5g21005	unknown protein	S.X.	H.G.	Please select
0.66	82.3	ZmAffx.1417.1.S1_at	40794996-92	-	-	0	Atmg00830	-	S.X.	H.G.	Please select
0.65	82.1	Zm.6963.2.A1_at	CD433950	-	-	1e-15	At5g52410	unknown protein	S.X.	H.G.	Please select
0.65	82.1	Zm.15430.1.S1_at	AY112559.1	-	-	4e+0	At5g57280	methyltransferase	S.X.	H.G.	Please select
0.62	79.8	ZmAffx.1332.1.S1_s_at	11990232-80	-	-	1e+0	At3g24465	-	S.X.	H.G.	Please select
0.62	79.8	ZmAffx.452.1.A1_at	AI677152	-	-	3e-6	At3g03380	DegP7 (DegP protease 7)	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.162.1.A1_at	AI668180	Hypothetical protein LOC100193115	-	2e-1	At2g27240	unknown protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.200.1.S1_at	AI668533	-	-	8e-1	At4g36500	unknown protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.740.1.S1_at	AI740113	Hypothetical protein LOC100192706	-	3e+0	At3g53630	unknown protein	S.X.	H.G.	Please select
0.59	76.1	ZmAffx.183.1.S1_at	AI668346	-	-	3e+0	At5g57510	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
16.1	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.2	97.4	GSM253250	ZM_24h_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
6.2	97.4	GSM253251	ZM_24h_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.4	97.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.3	96.9	GSM253247	ZM_12h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	765	ZmAffx.195.1.S1_at	AI668458	-	-	1e+1	At5g21005	unknown protein	C.G.	S.X.	Please select
0.09	4e-7	54	Zm.15432.1.S1_at	CA401222	-	-	9e+0	At5g02080	DNA/panthothenate metabolism flavoprotein family protein	C.G.	S.X.	Please select
0.04	1e-6	52	Zm.6755.1.A1_a_at	CF629886	nicotiana lesion-inducing like	-	2e+0	At2g12945	unknown protein	C.G.	S.X.	Please select
0.04	1e-6	52	Zm.6755.1.A1_at	CF629886	nicotiana lesion-inducing like	-	2e+0	At2g12945	unknown protein	C.G.	S.X.	Please select
0.06	1e-6	52	Zm.1735.1.S1_at	AY103687.1	photosystem I reaction center subunit III	-	2e-10	At1g31330	PSAF (photosystem I subunit F)	C.G.	S.X.	Please select
0.07	4e-4	44	Zm.923.1.S1_at	BE519352	-	-	2e+0	At1g35230	AGP5 (ARABINOGALACTAN-PROTEIN 5)	C.G.	S.X.	Please select
0.06	5e-3	40	Zm.8547.1.A1_at	BM338859	-	-	5e+0	At3g09380	-	C.G.	S.X.	Please select
0.03	5e-3	40	Zm.6816.1.A1_at	AY104584.1	hypothetical protein LOC100274437	-	2e-1	At5g15820	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.10	2e-2	38	Zm.17935.1.A1_at	BM080589	Hypothetical protein LOC100191390	-	7e+0	At5g64470	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.05	1e+1	30	Arabidopsis thaliana	At5g21005	6240357	unknown protein	F:unknown;P:unknown;C:endomembrane system	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	GmaAffx.74040.1.S1_at	BG316398	-	-	3e-25	At4g36530	hydrolase, alpha/beta fold family protein	C.G.	S.X.	Please select
0.05	2e+0	32	Hordeum vulgare	HVSMEb0007H18r2_at	HVSMEb0007H18r2	-	-	6e+0	At5g60220	TET4 (TETRASPANIN4)	C.G.	S.X.	Please select
0.03	1e-1	38	Oryza sativa	Os07g0694400	AK060667.1	-	Glycosyl transferase, family 43 protein	1e-1	At1g29380	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e+0	34	Populus trichocarpa	PtpAffx.209761.1.S1_at	pmrna19258	hypothetical protein	-	7e-1	At1g32540	LOL1 (LSD ONE LIKE 1)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	8e-1	34	Triticum aestivum	TaAffx.77674.1.S1_at	CA744393	-	-	7e-1	At3g17820	ATGSKB6	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1620223_at	CA818469	-	-	1e+0	At3g07210	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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