Gene omics information

Query gene ID	ZmAffx.190.1.S1_at
Gene name	ubiquitin family protein
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.190.1.S1_at	AI881316	ubiquitin family protein	-	5e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	S.X.	H.G.	Please select
0.40	48.5	Zm.2463.2.S1_at	AW191411	hypothetical protein LOC100193981	-	3e+0	At2g14890	AGP9 (ARABINOGALACTAN PROTEIN 9)	S.X.	H.G.	Please select
0.35	38.9	ZmAffx.889.1.S1_at	AI770841	pre-mRNA processing factor	-	8e-7	At2g40650	pre-mRNA splicing factor PRP38 family protein	S.X.	H.G.	Please select
0.33	36.0	Zm.13289.1.S1_at	CA826954	-	-	7e-2	At1g22210	trehalose-6-phosphate phosphatase, putative	S.X.	H.G.	Please select
0.30	29.8	ZmAffx.592.1.A1_at	AI715020	-	-	1e+1	At3g12300	unknown protein	S.X.	H.G.	Please select
0.30	29.8	Zm.2146.1.A1_at	AW287813	-	-	5e+0	At5g35475	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
13.2	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.8	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.8	95.5	GSM202304	B73 immature ear tissue, biological replicate 3	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	807	ZmAffx.190.1.A1_at	AI881316	-	-	5e-2	At3g56910	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	C.G.	S.X.	Please select
0.03	2e-2	38	Zm.7056.5.S1_at	AY108536.1	hypothetical protein LOC100272517	-	3e-15	At5g45390	CLPP4 (CLP PROTEASE P4)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.15632.1.S1_at	CD437316	Hypothetical protein LOC100193404	-	6e-1	At4g18335	unknown protein	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.13589.1.A1_at	AY107793.1	-	-	1e+0	At3g04920	40S ribosomal protein S24 (RPS24A)	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.10812.1.A1_at	CD976050	-	-	2e-4	At2g28450	zinc finger (CCCH-type) family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.632.1.S1_at	AF079429.1	recombination protein51 gene b	-	3e-31	At5g20850	ATRAD51	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.2573.1.A1_at	CF626061	hypothetical protein LOC100276087	-	1e+1	At5g44820	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.17292.1.S1_at	CK368812	hypothetical protein LOC100272452	-	6e-1	At1g25155	anthranilate synthase beta subunit, putative	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.14688.1.S1_at	BQ485280	-	-	2e-2	At5g42980	ATTRX3 (THIOREDOXIN 3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	5e-2	38	Arabidopsis thaliana	At3g56910	824858	PSRP5 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 5)	F:molecular_function unknown;P:biological_process unknown;C:thylakoid, chloroplast thylakoid membrane, chloroplast, chloroplast envelope;PM	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	1e+0	34	Glycine max	GmaAffx.72539.1.S1_at	BG047426	-	-	5e-1	At3g09990	equilibrative nucleoside transporter, putative (ENT2)	C.G.	S.X.	Please select
0.07	2e-9	61	Hordeum vulgare	Contig9269_s_at	Contig9269	-	-	2e+0	At2g19730	60S ribosomal protein L28 (RPL28A)	C.G.	S.X.	Please select
0.09	2e-18	93	Oryza sativa	Os07g0498800	AB078881.1	-	Calreticulin interacted protein	1e-1	At5g42220	ubiquitin family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	2e-2	40	Populus trichocarpa	PtpAffx.205546.1.S1_at	pmrna10970	hypothetical protein	-	1e+0	At1g32550	ferredoxin family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	TaAffx.9012.1.S1_at	CA616443	-	-	2e+1	At5g47540	binding	C.G.	S.X.	Please select
0.05	9e-1	32	Vitis vinifera	1620835_at	BQ800355	-	-	6e-1	At3g45443	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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