CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID ZmAffx.174.1.A1_at

Gene name SAUR12 - auxin-responsive SAUR family member

Organism Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description Ev AGI code Arabidopsis gene name S.X. H.G. Other DB
0.91 99.0 ZmAffx.174.1.A1_at AI668269 SAUR12 - auxin-responsive SAUR family member - 3e+0 At5g59060 unknown protein S.X. H.G.
0.63 81.1 ZmAffx.1455.1.S1_at 11990232-22 - - 0 Atcg00350 - S.X. H.G.
0.53 69.1 ZmAffx.1424.1.S1_at 40794996-99 - - 9e+0 At2g40240 pentatricopeptide (PPR) repeat-containing protein S.X. H.G.
0.50 65.7 ZmAffx.1352.1.S1_at 40794996-156 - - 0 Atmg00160 - S.X. H.G.
0.48 61.3 Zm.9469.1.A1_at BM269128 - - 2e+1 At3g21610 - S.X. H.G.
0.47 59.9 ZmAffx.1408.1.S1_at 40794996-83 - - 3e+0 At5g39850 40S ribosomal protein S9 (RPS9C) S.X. H.G.
0.46 58.4 ZmAffx.175.1.A1_at AI668276 - - 3e+0 At3g06820 mov34 family protein S.X. H.G.
0.42 51.3 ZmAffx.1453.1.S1_at 11990232-20 - - 3e-46 Atcg00330 - S.X. H.G.
0.40 48.5 ZmAffx.1415.1.S1_at 40794996-90 - - 4e-2 At2g25312 - S.X. H.G.
0.32 33.4 ZmAffx.1414.1.S1_at 40794996-89 - - 0 Atmg00520 - S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
7.8 97.9 GSM206301 Upper pulvinus 5 min polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.0 97.3 GSM206331 Lower pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
6.0 97.3 GSM206328 Upper pulvinus 60 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.8 97.2 GSM206299 Left pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
5.2 96.9 GSM206325 Upper pulvinus 5 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.9 96.7 GSM253269 ZM_4.5d_Mock_3inf_II GSE10023 Maize gene expression during infection with Ustilago maydis
4.7 96.5 GSM206334 Lower pulvinus 60 min polysomal RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.6 96.4 GSM206313 Upper pulvinus 5 min total RNA biorep 2 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.5 96.3 GSM206305 Right pulvinus control polysomal RNA biorep 1 GSE8320 Transcriptional and translational gene regulation in the maize pulvinus
4.4 96.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.56 2e-132 470 ZmAffx.174.1.S1_at AI668269 - - 3e+0 At5g59060 unknown protein C.G. S.X.
0.04 1e-3 42 Zm.8016.1.A1_at BI992016 hypothetical protein LOC100275155 - 3e-1 At3g57950 unknown protein C.G. S.X.
0.03 2e-2 38 Zm.8796.1.A1_at BG841012 - - 2e+0 At2g28910 CXIP4 (CAX INTERACTING PROTEIN 4) C.G. S.X.
0.03 2e-2 38 Zm.2127.1.S1_at AY105999.1 calcyclin-binding protein - 1e-1 At2g41225 unknown protein C.G. S.X.
0.03 2e-2 38 Zm.14530.1.A1_at AY179882.1 zea floricaula/leafy1 - 8e-13 At5g61850 LFY (LEAFY) C.G. S.X.
0.01 9e-2 36 Zm.50.1.A1_at D73410.1 phospholipase D - 6e-34 At3g15730 PLDALPHA1 (PHOSPHOLIPASE D ALPHA 1) C.G. S.X.
0.01 3e-1 34 Zm.8489.1.A1_at BQ538173 hypothetical protein LOC100273569 - 2e-23 At3g59660 C2 domain-containing protein / GRAM domain-containing protein C.G. S.X.
0.03 3e-1 34 Zm.7386.1.S1_at BM334549 DNA binding protein - 1e-1 At3g50330 HEC2 (HECATE 2) C.G. S.X.
0.01 3e-1 34 Zm.501.1.S1_at U43034.2 permease 1 - 3e-1 At1g65550 xanthine/uracil permease family protein C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 3e+0 32 Arabidopsis thaliana At5g59060 836023 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P - - - C.G. S.X.
0.03 1e+0 34 Glycine max HgAffx.10808.1.S1_at CB935605 - - 2e-2 At1g58420 - C.G. S.X.
0.15 3e-14 77 Hordeum vulgare Contig21246_at Contig21246 - - 3e-2 At5g07600 oleosin / glycine-rich protein C.G. S.X.
0.12 1e-7 57 Oryza sativa Os02g0769100 AK107987.1 - Auxin responsive SAUR protein family protein 4e-1 At5g25490 zinc finger (Ran-binding) family protein C.G. S.X.
0.04 4e+0 32 Populus trichocarpa PtpAffx.220696.1.S1_at pmrna37108 hypothetical protein - 2e+1 At4g00850 GIF3 (GRF1-INTERACTING FACTOR 3) C.G. S.X.
0.15 6e-14 77 Triticum aestivum Ta.20101.1.S1_at CA667105 - - 2e+0 At3g15780 unknown protein C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1617264_at CB004861 - - 1e+0 At4g13830 J20 (DNAJ-LIKE 20) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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