Gene omics information

Query gene ID	ZmAffx.160.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.56	74.4	ZmAffx.160.1.A1_at	AI668152	-	-	8e-1	At4g24380	unknown protein	S.X.	H.G.	Please select
0.91	99.0	Zm.3132.1.A1_at	BE512386	hypothetical protein LOC100273996	-	1e-7	At3g02510	regulator of chromosome condensation (RCC1) family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1187.1.A1_at	BE012211	-	-	3e+0	At4g29033	-	S.X.	H.G.	Please select
0.53	69.1	Zm.18381.1.A1_s_at	CO523274	Hypothetical protein LOC100216796	-	4e-1	At3g03720	CAT4 (CATIONIC AMINO ACID TRANSPORTER 4)	S.X.	H.G.	Please select
0.50	65.7	Zm.1140.1.S1_at	BM073428	hypothetical protein LOC100279272	-	4e-14	At3g49670	BAM2 (BARELY ANY MERISTEM 2)	S.X.	H.G.	Please select
0.25	21.3	ZmAffx.195.1.A1_at	AI668458	-	-	1e+1	At5g21005	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
36.3	99.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
35.8	99.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.7	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.9	99.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.6	99.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.2	99.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	765	ZmAffx.160.1.S1_at	AI668152	-	-	8e-1	At4g24380	unknown protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.6461.1.A1_at	CK828103	hypothetical protein LOC100273899	-	2e+0	At3g60180	uridylate kinase, putative / uridine monophosphate kinase, putative / UMP kinase, putative	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.4136.1.A1_at	BM080315	amino acid binding protein	-	4e-1	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.7336.1.A1_at	AF371263.1	hypothetical protein LOC100279133 /// 50kD gamma zein	-	2e-3	At1g30460	CPSF30	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6227.1.S1_at	AF272759.1	kinesin-like protein15	-	3e-23	At3g51150	kinesin motor family protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5645.1.A1_at	AI629785	-	-	2e-6	At5g24710	-	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.518.1.A1_at	AF200526.1	cellulose synthase-2	-	9e-120	At4g32410	CESA1 (CELLULOSE SYNTHASE 1)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4652.1.A1_at	CO530334	hypothetical protein LOC100192057	-	3e-10	At2g36010	E2F3 (E2F TRANSCRIPTION FACTOR 3)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.18388.1.A1_at	CB604567	hypothetical protein LOC100273514	-	1e-1	At3g46620	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	8e-1	34	Arabidopsis thaliana	At4g24380	828540	unknown protein	F:unknown;P:10-formyltetrahydrofolate biosynthetic process, folic acid and derivative biosynthetic process;C:unknown;FMPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e+0	32	Glycine max	GmaAffx.91550.1.S1_at	CF807275	-	-	2e+0	At5g37950	transferase, transferring hexosyl groups	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HVSMEa0012A19r2_x_at	HVSMEa0012A19r2	-	-	1e+1	At2g07505	unknown protein	C.G.	S.X.	Please select
0.04	6e+0	32	Oryza sativa	OsAffx.8915.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.03	4e+0	32	Populus trichocarpa	PtpAffx.221471.1.S1_s_at	pmrna38371	hypothetical protein	-	5e+0	At4g10820	F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	1e+1	30	Triticum aestivum	TaAffx.66725.1.A1_at	BG905322	-	-	6e+0	At5g64541	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Vitis vinifera	1619638_at	CF606242	hypothetical protein LOC100243143	-	1e-1	At3g19900	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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