Gene omics information

Query gene ID	ZmAffx.159.1.A1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.159.1.A1_at	AI668136	-	-	1e+1	At5g48680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1422.1.S1_at	40794996-97	-	-	3e+0	At3g06180	structural constituent of ribosome	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.1346.1.S1_at	40794996-153	-	-	5e-21	Atmg00160	-	S.X.	H.G.	Please select
0.59	76.1	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	S.X.	H.G.	Please select
0.59	76.1	ZmAffx.1374.1.S1_at	40794996-162	-	-	0	Atmg00270	-	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.1495.1.S1_at	40794996-112	-	-	3e+0	At4g10160	zinc finger (C3HC4-type RING finger) family protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
17.4	99.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.3	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.5	98.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.3	97.8	GSM253282	ZM_8d_SG200_3Alu_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.96	0	728	ZmAffx.159.1.S1_at	AI668136	-	-	1e+1	At5g48680	sterile alpha motif (SAM) domain-containing protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.5151.1.A1_at	AY172976.1	SET domain protein 123	-	4e-5	At5g06620	SDG38 (SET DOMAIN PROTEIN 38)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9691.1.A1_at	BM335746	-	-	4e+0	At4g15150	glycine-rich protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.7409.1.A1_at	CF042542	hypothetical protein LOC100191559	-	2e-1	At4g15790	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6492.1.A1_at	AI692087	Hypothetical protein LOC100216988	-	5e-1	At4g19512	unknown protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.6520.1.A1_at	AI833479	hypothetical protein LOC100276260	-	1e+0	At5g24580	copper-binding family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6162.2.A1_at	AI676924	hypothetical protein LOC100272661	-	4e-5	At1g62760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6162.2.S1_at	AI676924	-	-	4e-5	At1g62760	invertase/pectin methylesterase inhibitor family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6093.2.S1_at	CD440434	translocon-associated protein beta containing protein	-	6e-1	At5g14030	translocon-associated protein beta (TRAPB) family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g48680	834926	sterile alpha motif (SAM) domain-containing protein	F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	3e-1	36	Glycine max	GmaAffx.45872.1.S1_at	BM095149	-	-	2e-23	At4g29220	PFK1 (PHOSPHOFRUCTOKINASE 1)	C.G.	S.X.	Please select
0.05	1e-1	36	Hordeum vulgare	Contig12812_s_at	Contig12812	-	-	4e+0	At4g09440	unknown protein	C.G.	S.X.	Please select
0.04	4e-1	36	Oryza sativa	Os06g0242250	9634.m01332	-	-	4e+0	At3g60540	sec61beta family protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	Ptp.899.1.S1_at	CK089331	laccase 90b /// laccase 90d	-	1e-3	At5g05390	LAC12 (laccase 12)	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.06	3e+0	32	Triticum aestivum	Ta.30816.1.S1_at	CN008413	GID2L	-	2e-1	At1g49010	myb family transcription factor	C.G.	S.X.	Please select
0.04	9e-1	32	Vitis vinifera	1612905_s_at	CB345326	hypothetical protein LOC100258381	-	5e-3	At1g12830	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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