Gene omics information

Query gene ID	ZmAffx.1538.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1538.1.S1_at	40794996-128	-	-	3e+0	At3g21730	dihydroneopterin aldolase family protein	S.X.	H.G.	Please select
0.91	99.0	ZmAffx.1501.1.S1_at	40794996-118	-	-	8e-1	At5g12300	C2 domain-containing protein	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1486.1.S1_at	11990232-43	-	-	3e-56	Atcg00650	-	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1143.1.S1_at	AW399931	-	-	8e+0	At5g01340	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1480.1.S1_at	40794996-107	-	-	1e+1	At5g15200	40S ribosomal protein S9 (RPS9B)	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1357.1.S1_at	40794996-46	-	-	2e-1	At1g26921	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
20.9	99.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.9	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.6	99.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	32	Zm.3902.1.A1_at	AW062054	-	-	1e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.3902.1.S1_at	AY106289.1	-	-	1e+0	At5g55570	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.17915.1.A1_at	CF038577	-	-	7e-103	Atmg00830	-	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.16983.1.A1_at	AY107293.1	-	-	2e+0	At3g14670	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	30	Zm.8859.1.A1_at	BM340085	-	-	5e+0	At2g37240	-	C.G.	S.X.	Please select
0.01	4e+0	30	Zm.4981.1.A1_at	CK826720	-	-	3e-3	At3g18610	ATRANGAP1 (RAN GTPASE-ACTIVATING PROTEIN 1)	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.4045.1.S1_at	BE518779	6-phosphogluconolactonase	-	3e+0	At1g13700	glucosamine/galactosamine-6-phosphate isomerase family protein	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.2288.1.S1_at	CB329565	hypothetical protein LOC100272544	-	7e-1	At2g34750	RNA polymerase I specific transcription initiation factor RRN3 family protein	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.15852.2.S1_a_at	AY108720.1	-	-	1e-41	At5g03430	phosphoadenosine phosphosulfate (PAPS) reductase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	3e+0	32	Arabidopsis thaliana	At3g21730	821727	dihydroneopterin aldolase family protein	F:dihydroneopterin aldolase activity;P:folic acid and derivative metabolic process;C:endomembrane system;BOPA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	2e-1	36	Glycine max	HgAffx.4713.1.S1_at	CD748711	-	-	4e+0	At4g00210	LBD31 (LOB DOMAIN-CONTAINING PROTEIN 31)	C.G.	S.X.	Please select
0.05	5e+0	30	Hordeum vulgare	HU10G19u_x_at	HU10G19u	-	-	1e-1	At4g01150	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	32	Oryza sativa	OsAffx.12724.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.05	1e-2	40	Populus trichocarpa	PtpAffx.36907.1.A1_at	CV273882	-	-	2e+1	At5g10880	tRNA synthetase-related / tRNA ligase-related	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	3e+0	32	Triticum aestivum	TaAffx.132271.3.S1_at	CA630053	-	-	2e-1	At5g46780	VQ motif-containing protein	C.G.	S.X.	Please select
0.04	2e-1	34	Vitis vinifera	1617088_at	BQ797725	hypothetical protein LOC100245381	-	1e-31	At4g35230	BSK1 (BR-SIGNALING KINASE 1)	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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