Gene omics information

Query gene ID	ZmAffx.1519.1.S1_s_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1519.1.S1_s_at	11990232-56	-	-	3e-25	Atcg00770	-	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.14.1.S1_at	AF536189.1	-	-	1e-8	Atmg01080	-	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.163.1.S1_at	AI668189	-	-	8e-1	At5g55240	caleosin-related family protein / embryo-specific protein, putative	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1395.1.S1_at	40794996-70	-	-	2e-1	At1g80700	unknown protein	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.1392.1.S1_at	40794996-67	-	-	0	Atmg00513	-	S.X.	H.G.	Please select
0.57	75.1	ZmAffx.1500.1.S1_at	40794996-117	-	-	6e-78	Atcg01310	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.1	98.2	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.8	93.5	GSM253255	ZM_24h_SG200_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	815	ZmAffx.1519.1.S1_at	11990232-56	-	-	3e-25	Atcg00770	-	C.G.	S.X.	Please select
0.73	4e-161	565	ZmAffx.978.1.A1_at	AI833953	-	-	6e-23	Atcg00770	-	C.G.	S.X.	Please select
0.02	3e-1	34	ZmAffx.1305.1.S1_s_at	11990232-73	-	-	0	Atcg01250	-	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.3789.1.S1_at	AW438148	diacylglycerol O-acyltransferase 1	-	1e-5	At3g51520	diacylglycerol acyltransferase family	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.12355.1.S1_at	CO520111	hypothetical protein LOC100280053	-	2e-4	At1g77390	CYCA1	C.G.	S.X.	Please select
0.01	5e+0	30	ZmAffx.1429.1.S1_at	11990232-14	-	-	0	Atcg00170	-	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.7701.1.A1_at	CK370350	hypothetical protein LOC100192685	-	6e-13	At3g46830	ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.5025.1.A1_at	BM073031	-	-	1e+0	At2g06908	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.12750.1.S1_a_at	CA402457	-	-	9e-16	At4g39080	VHA-A3 (VACUOLAR PROTON ATPASE A3)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.52	3e-25	115	Arabidopsis thaliana	Atcg00770	-	-	chloroplast 30S ribosomal protein S8	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.32	9e-17	87	Glycine max	Gma.17984.1.S1_at	BQ454011	-	-	7e-52	Atcg00770	-	C.G.	S.X.	Please select
0.77	0	672	Hordeum vulgare	Contig11739_at	Contig11739	-	-	6e-18	Atcg00770	-	C.G.	S.X.	Please select
0.99	0	775	Oryza sativa	OsAffx.32335.1.S1_x_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.18	2e-23	109	Populus trichocarpa	PtpAffx.198.1.S1_at	CV242920	hypothetical protein	-	3e-115	Atcg00750	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.51	5e-107	387	Triticum aestivum	TaAffx.128896.21.S1_x_at	CA711068	-	-	7e-14	Atcg00770	-	C.G.	S.X.	Please select
0.07	1e-33	141	Vitis vinifera	1622010_at	CF207538	similar to RNA polymerase alpha subunit	-	0	Atcg00740	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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