Gene omics information

Query gene ID	ZmAffx.1513.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1513.1.S1_at	11990232-53	-	-	3e-25	Atcg00750	-	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1494.1.S1_s_at	40794996-111	-	-	3e+0	At2g41730	unknown protein	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.156.1.S1_at	AI668123	-	-	3e+0	At2g35345	unknown protein	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.1189.1.A1_at	BE025258	-	-	8e-1	At3g04181	unknown protein	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.150.1.S1_at	AI667840	Hypothetical protein LOC100193164	-	1e+1	At5g52605	-	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.1517.1.S1_at	11990232-55	-	-	2e+0	At4g11175	translation initiation factor IF-1, chloroplast, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
9.7	98.3	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	1e+0	32	Zm.6553.1.A1_at	BG265813	-	-	7e-51	At1g80070	SUS2 (ABNORMAL SUSPENSOR 2)	C.G.	S.X.	Please select
0.01	1e+0	32	Zm.1442.1.A1_at	BM080134	peroxisomal fatty acid beta-oxidation multifunctional protein	-	2e-18	At4g29010	AIM1 (ABNORMAL INFLORESCENCE MERISTEM)	C.G.	S.X.	Please select
0.02	6e+0	30	ZmAffx.1435.1.S1_at	11990232-1	-	-	0	Atcg00020	-	C.G.	S.X.	Please select
0.01	6e+0	30	Zm.4876.1.S1_at	CF631731	-	-	9e-26	At3g22200	POP2 (POLLEN-PISTIL INCOMPATIBILITY 2)	C.G.	S.X.	Please select
0.04	6e+0	30	Zm.4564.1.A1_at	BM268259	-	-	9e-2	At4g33160	ubiquitin-protein ligase	C.G.	S.X.	Please select
0.02	6e+0	30	Zm.10591.1.S1_at	BQ479053	hypothetical protein LOC100194290	-	3e-22	At3g58140	phenylalanyl-tRNA synthetase class IIc family protein	C.G.	S.X.	Please select
0.03	2e+1	28	ZmAffx.568.1.A1_at	AI714643	-	-	1e+1	At5g01734	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	28	ZmAffx.568.1.S1_at	AI714643	-	-	1e+1	At5g01734	unknown protein	C.G.	S.X.	Please select
0.03	2e+1	28	Zm.9654.1.A1_at	BM351433	-	-	3e-1	At2g44420	protein N-terminal asparagine amidohydrolase family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.50	3e-25	115	Arabidopsis thaliana	Atcg00750	-	-	30S chloroplast ribosomal protein S11	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	5e+0	32	Glycine max	GmaAffx.77843.1.S1_at	BI972872	-	-	8e-1	At2g15890	MEE14 (maternal effect embryo arrest 14)	C.G.	S.X.	Please select
0.04	2e+0	32	Hordeum vulgare	HVSMEn0020P13r2_x_at	HVSMEn0020P13r2	-	-	1e+1	At5g48790	unknown protein	C.G.	S.X.	Please select
0.92	0	686	Oryza sativa	OsAffx.32332.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.12	2e-11	69	Populus trichocarpa	PtpAffx.198.1.S1_at	CV242920	hypothetical protein	-	3e-115	Atcg00750	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.62	2e-137	488	Triticum aestivum	TaAffx.129824.8.S1_at	CA671635	-	-	8e-23	Atcg00750	-	C.G.	S.X.	Please select
0.23	5e-24	109	Vitis vinifera	1617074_s_at	CF204027.1	similar to Os04g0237300 /// similar to RNA polymerase alpha subunit /// similar to RNA polymerase alpha subunit	-	3e-128	Atcg00750	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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