Gene omics information

Query gene ID	ZmAffx.151.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.70	87.0	ZmAffx.151.1.S1_at	AI667841	-	-	2e-10	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	S.X.	H.G.	Please select
0.60	77.8	Zm.13588.1.A1_at	AY107800.1	-	-	1e+0	At4g34670	40S ribosomal protein S3A (RPS3aB)	S.X.	H.G.	Please select
0.50	65.7	Zm.6275.1.S1_a_at	AF540907.1	benzoxazin6	-	7e-1	At1g06640	2-oxoglutarate-dependent dioxygenase, putative	S.X.	H.G.	Please select
0.44	55.7	Zm.7016.1.A1_at	AY103859.1	-	-	3e-1	At5g44610	MAP18 (Microtubule-associated Protein 18)	S.X.	H.G.	Please select
0.44	55.7	ZmAffx.976.1.A1_at	AI833931	-	-	1e-2	At4g23880	unknown protein	S.X.	H.G.	Please select
0.36	41.3	Zm.13940.1.S1_at	AI677337	hypothetical protein LOC100193246	-	1e+0	At4g00810	60S acidic ribosomal protein P1 (RPP1B)	S.X.	H.G.	Please select
0.29	28.1	Zm.15242.1.A1_at	BM340075	-	-	1e+1	At3g16712	unknown protein	S.X.	H.G.	Please select
0.29	28.1	Zm.361.1.A1_at	AB060130.1	response regulator 8	-	5e-3	At3g16857	ARR1 (ARABIDOPSIS RESPONSE REGULATOR 1)	S.X.	H.G.	Please select
0.22	16.9	Zm.9940.1.A1_at	BM339055	-	-	3e-2	At5g26860	LON1 (LON PROTEASE 1)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
30.8	99.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.5	99.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
29.3	99.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.6	99.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.0	99.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.0	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.1	99.1	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.8	99.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.6	96.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
1.00	0	765	ZmAffx.151.1.A1_at	AI667841	-	-	2e-10	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.9554.1.A1_at	BM267111	hypothetical protein LOC100280419	-	5e+0	At3g53850	-	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8914.1.S1_at	BM073720	hypothetical protein LOC100275965	-	2e+0	At3g47810	MAG1 (MAIGO 1)	C.G.	S.X.	Please select
0.04	5e+0	30	Zm.8775.2.A1_at	AI065673	-	-	9e-1	At3g23830	GRP4 (GLYCINE-RICH RNA-BINDING PROTEIN 4)	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.8775.1.A1_at	BM338343	hypothetical protein LOC100278477	-	1e+0	At3g08890	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.7646.1.A1_at	BM350058	-	-	2e-2	At5g64310	AGP1 (ARABINOGALACTAN PROTEIN 1)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.6401.2.S1_a_at	BG266177	hypothetical protein LOC100193788	-	1e-5	At2g03800	GEK1 (GEKO1)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5200.1.A1_at	AY108333.1	-	-	5e-1	At1g63900	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.4833.1.A1_at	CF003111	hypothetical protein LOC100272303	-	2e-12	At5g57815	cytochrome c oxidase subunit 6b, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	2e-10	65	Arabidopsis thaliana	At1g50140	841436	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:biological_process unknown;C:cellular_component unknown;BOMFPAV	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.07	2e-5	50	Glycine max	GmaAffx.2451.1.S1_at	BE822635	-	-	3e-1	At2g32645	unknown protein	C.G.	S.X.	Please select
0.10	2e-24	111	Hordeum vulgare	Contig8786_at	Contig8786	-	-	1e-17	At1g50140	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please select
0.06	2e-18	93	Oryza sativa	Os06g0225900	AK058549.1	-	AAA ATPase, central region domain containingprotein	2e-44	At3g19740	ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	1e+0	34	Populus trichocarpa	PtpAffx.9780.1.A1_at	DN490439	hypothetical protein	-	1e+0	At3g53490	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.22	4e-15	81	Triticum aestivum	Ta.15568.1.S1_at	CA485501	-	-	2e+0	At4g39220	ATRER1A	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1622838_at	CB345686	hypothetical protein LOC100248740	-	3e-1	At1g28815	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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