Gene omics information

Query gene ID	ZmAffx.1500.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1500.1.S1_at	40794996-117	-	-	6e-78	Atcg01310	-	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1472.1.S1_at	11990232-39	-	-	3e-18	Atcg00590	-	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.1519.1.S1_s_at	11990232-56	-	-	3e-25	Atcg00770	-	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.14.1.S1_at	AF536189.1	-	-	1e-8	Atmg01080	-	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1477.1.S1_at	40794996-104	-	-	9e+0	At5g56100	glycine-rich protein / oleosin	S.X.	H.G.	Please select
0.56	74.4	ZmAffx.1395.1.S1_at	40794996-70	-	-	2e-1	At1g80700	unknown protein	S.X.	H.G.	Please select

Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
34.1	99.9	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
32.2	99.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.9	99.8	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
28.4	99.7	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.2	99.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.8	99.6	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	3e-127	452	ZmAffx.1516.1.S1_s_at	11990232-108	large ribosomal protein 2	-	0	Atcg01310	-	C.G.	S.X.	Please select
0.04	2e+1	28	ZmAffx.810.1.A1_at	AI770396	-	-	2e-1	At3g01880	unknown protein	C.G.	S.X.	Please select
0.04	2e+1	28	ZmAffx.810.1.S1_at	AI770396	-	-	2e-1	At3g01880	unknown protein	C.G.	S.X.	Please select
0.01	2e+1	28	ZmAffx.1407.1.S1_at	40794996-82	-	-	4e-1	At1g42680	myosin-related	C.G.	S.X.	Please select
0.02	2e+1	28	Zm.8991.1.A1_at	BM350233	hypothetical protein LOC100272589	-	1e-14	At2g32600	hydroxyproline-rich glycoprotein family protein	C.G.	S.X.	Please select
0.01	2e+1	28	Zm.8253.1.S1_at	CD441439	hypothetical protein LOC100216588	-	3e+0	At4g29340	PRF4 (PROFILIN 4)	C.G.	S.X.	Please select
0.01	2e+1	28	Zm.82.1.S1_at	X57276.1	colored plant1	-	2e-2	At1g63650	EGL3 (ENHANCER OF GLABRA 3)	C.G.	S.X.	Please select
0.02	2e+1	28	Zm.7864.1.A1_at	BM080210	-	-	7e+0	At5g05220	unknown protein	C.G.	S.X.	Please select
0.02	2e+1	28	Zm.5261.1.A1_at	CF041434	hypothetical protein LOC100273065	-	2e-37	At2g41540	GPDHC1	C.G.	S.X.	Please select

Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.44	6e-78	289	Arabidopsis thaliana	Atcg01310	-	-	encodes a chloroplast ribosomal protein L2, a constituent of the large subunit of the ribosomal complex	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.48	4e-77	287	Glycine max	GmaAffx.88804.1.S1_s_at	CK605879	-	-	0	Atcg01310	-	C.G.	S.X.	Please select
0.33	9e-85	311	Hordeum vulgare	ChlorContig17_s_at	ChlorContig17	-	-	0	Atcg01310	-	C.G.	S.X.	Please select
0.15	3e-140	498	Oryza sativa	Os05g0292600	AK071967.1	-	Chloroplast 50S ribosomal protein L14	5e-68	Atcg00780	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.20	9e-81	299	Populus trichocarpa	PtpAffx.18588.1.S1_at	CV271046	hypothetical protein	-	0	Atcg01310	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.33	2e-139	494	Triticum aestivum	TaAffx.128896.2.S1_at	BJ253515	-	-	1e-160	Atcg01310	-	C.G.	S.X.	Please select
0.04	1e+1	28	Vitis vinifera	1622287_at	CB982913	hypothetical protein LOC100245285	-	1e+0	At3g17160	unknown protein	C.G.	S.X.	Please select

Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage