Gene omics information

Query gene ID	ZmAffx.1487.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.79	92.8	ZmAffx.1487.1.S1_at	11990232-44	-	-	8e-13	Atcg00660	-	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1538.1.S1_at	40794996-128	-	-	3e+0	At3g21730	dihydroneopterin aldolase family protein	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.1501.1.S1_at	40794996-118	-	-	8e-1	At5g12300	C2 domain-containing protein	S.X.	H.G.	Please select
0.78	92.5	ZmAffx.1480.1.S1_at	40794996-107	-	-	1e+1	At5g15200	40S ribosomal protein S9 (RPS9B)	S.X.	H.G.	Please select
0.76	91.1	ZmAffx.1486.1.S1_at	11990232-43	-	-	3e-56	Atcg00650	-	S.X.	H.G.	Please select
0.75	90.8	ZmAffx.1471.1.S1_at	11990232-38	-	-	9e-89	Atcg00580	-	S.X.	H.G.	Please select
0.75	90.8	ZmAffx.1357.1.S1_at	40794996-46	-	-	2e-1	At1g26921	unknown protein	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.1143.1.S1_at	AW399931	-	-	8e+0	At5g01340	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.72	88.6	ZmAffx.1125.1.A1_at	AW288880	-	-	3e+0	At5g57520	ZFP2 (ZINC FINGER PROTEIN 2)	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.171.1.S1_at	AI668231	Hypothetical protein LOC100192595	-	3e+0	At1g51160	synbindin, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
26.7	99.7	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.5	99.7	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
26.4	99.7	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.9	99.6	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.1	99.6	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
24.6	99.6	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.8	99.5	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.4	99.5	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.1	99.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	1e+0	32	Zm.9519.1.A1_at	AY107523.1	hypothetical protein LOC100193889	-	9e-7	At2g25670	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.9519.1.A1_a_at	AY107523.1	hypothetical protein LOC100193889	-	9e-7	At2g25670	unknown protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.2787.1.A1_at	AY105546.1	hypothetical protein LOC100191148	-	8e-7	At3g08950	electron transport SCO1/SenC family protein	C.G.	S.X.	Please select
0.02	1e+0	32	Zm.2530.1.A1_at	CF637153	-	-	7e-5	At1g58350	ZW18	C.G.	S.X.	Please select
0.03	5e+0	30	Zm.9636.1.A1_at	BM349325	-	-	2e+1	At5g67510	60S ribosomal protein L26 (RPL26B)	C.G.	S.X.	Please select
0.04	5e+0	30	Zm.9614.1.A1_at	BM335440	-	-	5e+0	At5g60650	unknown protein	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5155.2.S1_at	AY110523.1	hypothetical protein LOC100273191	-	8e-4	At5g21010	ATBPM5 (BTB-POZ and MATH domain 5)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4077.1.S1_x_at	AY105154.1	-	-	9e-7	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.4077.1.S1_at	AY105154.1	-	-	9e-7	At3g07880	Rho GDP-dissociation inhibitor family protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.62	8e-13	73	Arabidopsis thaliana	Atcg00660	-	-	encodes a chloroplast ribosomal protein L20, a constituent of the large subunit of the ribosomal complex	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.05	4e+0	32	Glycine max	Gma.1401.1.A1_at	AI856089	-	-	4e+0	At3g57190	peptide chain release factor, putative	C.G.	S.X.	Please select
0.04	3e-1	34	Hordeum vulgare	HU13I04u_s_at	HU13I04u	-	-	9e-1	At3g49760	AtbZIP5 (Arabidopsis thaliana basic leucine-zipper 5)	C.G.	S.X.	Please select
0.93	5e-148	523	Oryza sativa	Os10g0356500	NM_195995.1	-	Chlorophyll a-binding protein (Fragment)	2e-21	Atcg00670	-	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.40	1e-12	73	Populus trichocarpa	PtpAffx.222091.1.S1_x_at	pmrna39304	hypothetical protein	-	5e-26	Atcg00660	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	7e-1	34	Triticum aestivum	TaAffx.6760.1.S1_at	CA678244	-	-	1e+0	At2g29480	ATGSTU2 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 2)	C.G.	S.X.	Please select
0.36	7e-29	125	Vitis vinifera	1611558_at	CB345264	-	-	1e-74	Atcg00660	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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