Gene omics information

Query gene ID	ZmAffx.1480.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1480.1.S1_at	40794996-107	-	-	1e+1	At5g15200	40S ribosomal protein S9 (RPS9B)	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1486.1.S1_at	11990232-43	-	-	3e-56	Atcg00650	-	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1357.1.S1_at	40794996-46	-	-	2e-1	At1g26921	unknown protein	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.1538.1.S1_at	40794996-128	-	-	3e+0	At3g21730	dihydroneopterin aldolase family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1143.1.S1_at	AW399931	-	-	8e+0	At5g01340	mitochondrial substrate carrier family protein	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1511.1.S1_at	11990232-52	-	-	4e-48	Atcg00740	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.0	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.0	99.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.3	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.9	99.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.7	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.3	98.8	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+0	32	Zm.15878.1.A1_at	BM351620	Hypothetical protein LOC100191774	-	2e+0	At2g47400	CP12-1	C.G.	S.X.	Please select
0.01	4e+0	30	ZmAffx.1436.1.S1_at	11990232-2	-	-	2e-29	Atcg00040	-	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.18262.1.A1_at	CN845466	-	-	5e-1	At5g44280	RING1A (RING 1A)	C.G.	S.X.	Please select
0.05	4e+0	30	Zm.12377.1.S1_at	BQ577907	-	-	1e+1	At3g10915	reticulon family protein	C.G.	S.X.	Please select
0.04	4e+0	30	Zm.12023.1.A1_at	BM382741	hypothetical protein LOC100191979	-	1e+1	Atmg01270	-	C.G.	S.X.	Please select
0.04	2e+1	28	ZmAffx.712.1.A1_at	AI738386	-	-	3e+0	At4g38092	unknown protein	C.G.	S.X.	Please select
0.04	2e+1	28	ZmAffx.712.1.S1_at	AI738386	-	-	3e+0	At4g38092	unknown protein	C.G.	S.X.	Please select
0.05	2e+1	28	ZmAffx.696.1.A1_at	AI737443	-	-	3e+0	At2g45980	unknown protein	C.G.	S.X.	Please select
0.02	2e+1	28	Zm.9732.1.S1_at	AY108025.1	drought-induced protein 1	-	6e-1	At4g17800	DNA-binding protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	1e+1	30	Arabidopsis thaliana	At5g15200	831372	40S ribosomal protein S9 (RPS9B)	F:structural constituent of ribosome;P:translation;C:in 7 components;POMBFA	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+1	30	Glycine max	HgAffx.3380.1.S1_at	CK349310	-	-	2e-1	At4g20290	unknown protein	C.G.	S.X.	Please select
0.03	5e+0	30	Hordeum vulgare	Contig18878_at	Contig18878	-	-	4e-3	At1g22170	phosphoglycerate/bisphosphoglycerate mutase family protein	C.G.	S.X.	Please select
Os04g0646400	0.07	3e-7	Oryza sativa	Os04g0646300	-	-	-	0			C.G.	S.X.	Please select
0.04	3e+0	32	Populus trichocarpa	PtpAffx.204460.1.S1_s_at	pmrna8745	hypothetical protein	-	1e-2	At5g13640	ATPDAT	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	3e+0	32	Triticum aestivum	Ta.28533.1.S1_at	BJ288885	-	-	7e-1	At1g28330	DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1613934_s_at	CA814354	hypothetical protein LOC100260053	-	1e+1	Atmg01370	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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