Gene omics information

Query gene ID	ZmAffx.1477.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1477.1.S1_at	40794996-104	-	-	9e+0	At5g56100	glycine-rich protein / oleosin	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1502.1.S1_at	40794996-119	-	-	0	Atmg01360	-	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1500.1.S1_at	40794996-117	-	-	6e-78	Atcg01310	-	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.1519.1.S1_s_at	11990232-56	-	-	3e-25	Atcg00770	-	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.14.1.S1_at	AF536189.1	-	-	1e-8	Atmg01080	-	S.X.	H.G.	Please select
0.46	58.4	ZmAffx.166.1.S1_at	AI668207	-	-	1e+1	At5g57370	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
38.6	99.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.4	99.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.9	99.5	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.6	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.6	99.3	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.3	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.1	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.48	1e-98	357	ZmAffx.1476.1.S1_at	40794996-103	-	-	3e+0	At5g60540	PDX2 (PYRIDOXINE BIOSYNTHESIS 2)	C.G.	S.X.	Please select
0.03	4e+0	30	Zm.5364.1.A1_at	CF273142	-	-	6e-6	At5g25510	serine/threonine protein phosphatase 2A (PP2A) regulatory subunit B', putative	C.G.	S.X.	Please select
0.03	4e+0	30	Zm.5364.1.S1_at	CF273142	-	-	9e-5	At3g09880	ATB' BETA	C.G.	S.X.	Please select
0.01	4e+0	30	Zm.3559.1.S1_at	AY232822.1	global transcription factor group E	-	2e-2	At5g14270	ATBET9 (Arabidopsis thaliana Bromodomain and Extraterminal Domain protein 9)	C.G.	S.X.	Please select
0.02	4e+0	30	Zm.17516.1.S1_at	CF623514	hypothetical protein LOC100216611	-	3e-12	At5g63650	SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)	C.G.	S.X.	Please select
0.03	4e+0	30	Zm.16353.1.S1_at	CF349207	-	-	2e+0	At4g04360	unknown protein	C.G.	S.X.	Please select
0.02	2e+1	28	Zm.9014.2.A1_at	AI714470	PP2Ac-2 - Phosphatase 2A isoform 2 belonging to family 2	-	2e-68	At2g42500	PP2A-4	C.G.	S.X.	Please select
0.01	2e+1	28	Zm.789.1.S1_at	AI964685	protein phosphatase 2C	-	1e-6	At3g51370	protein phosphatase 2C, putative / PP2C, putative	C.G.	S.X.	Please select
0.03	2e+1	28	Zm.6228.1.A1_at	AI739920	-	-	1e+0	At1g64370	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.04	9e+0	30	Arabidopsis thaliana	At5g56100	835709	glycine-rich protein / oleosin	F:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+1	30	Glycine max	PsAffx.psMA009xK08f_at	PsAffx.psMA009xK08f	-	-	3e+0	At4g13520	SMAP1 (SMALL ACIDIC PROTEIN 1)	C.G.	S.X.	Please select
0.13	9e-26	115	Hordeum vulgare	Contig20041_at	Contig20041	-	-	5e+0	At5g23405	high mobility group (HMG1/2) family protein	C.G.	S.X.	Please select
0.05	4e+0	32	Oryza sativa	Os11g0660900	9639.m04066	-	-	9e+0	At5g47830	unknown protein	C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	3e+0	32	Populus trichocarpa	Ptp.935.1.A1_at	CK089575	hypothetical protein	-	4e+0	At5g59400	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.05	6e-1	34	Triticum aestivum	Ta.6361.3.S1_at	CA603366	-	-	1e-12	At2g29200	APUM1 (Arabidopsis Pumilio 1)	C.G.	S.X.	Please select
0.03	3e+0	30	Vitis vinifera	1622174_at	CB912233	hypothetical protein LOC100241032	-	5e+0	At4g38090	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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