Gene omics information

Query gene ID	ZmAffx.1472.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1472.1.S1_at	11990232-39	-	-	3e-18	Atcg00590	-	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.1519.1.S1_s_at	11990232-56	-	-	3e-25	Atcg00770	-	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.1500.1.S1_at	40794996-117	-	-	6e-78	Atcg01310	-	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.1395.1.S1_at	40794996-70	-	-	2e-1	At1g80700	unknown protein	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.14.1.S1_at	AF536189.1	-	-	1e-8	Atmg01080	-	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.163.1.S1_at	AI668189	-	-	8e-1	At5g55240	caleosin-related family protein / embryo-specific protein, putative	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
5.5	97.1	GSM253264	ZM_4d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
5.4	97.0	GSM253268	ZM_4.5d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.9	96.7	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM253258	ZM_2d_Mock_3inf_III	GSE10023	Maize gene expression during infection with Ustilago maydis
4.7	96.5	GSM253257	ZM_2d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.6	96.4	GSM253256	ZM_2d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis
4.6	96.4	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM253269	ZM_4.5d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
4.3	96.1	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3	96.1	GSM253259	ZM_2d_SG200_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.06	4e+0	28	ZmAffx.247.1.A1_at	AI670259	-	-	8e-1	At1g21830	unknown protein	C.G.	S.X.	Please select
0.06	4e+0	28	ZmAffx.247.1.S1_at	AI670259	-	-	8e-1	At1g21830	unknown protein	C.G.	S.X.	Please select
0.03	4e+0	28	Zm.1482.2.A1_at	CO531725	hypothetical protein LOC100279242	-	7e+0	At5g17280	unknown protein	C.G.	S.X.	Please select
0.04	4e+0	28	Zm.13966.2.A1_at	CF632224	-	-	4e+0	At4g29930	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.04	4e+0	28	Zm.13966.2.S1_a_at	CF632224	hypothetical protein LOC100274039	-	4e+0	At4g29930	basic helix-loop-helix (bHLH) family protein	C.G.	S.X.	Please select
0.04	4e+0	28	Zm.12387.1.S1_at	AW000286	-	-	2e+1	Atmg01300	-	C.G.	S.X.	Please select
0.05	2e+1	26	ZmAffx.736.2.S1_at	AW355861	-	-	3e+0	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	C.G.	S.X.	Please select
0.05	2e+1	26	ZmAffx.736.2.A1_at	AW355861	-	-	3e+0	At1g14687	AtHB32 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 32)	C.G.	S.X.	Please select
0.03	2e+1	26	Zm.8614.1.A1_at	BM341063	-	-	1e-1	At4g01640	-	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.66	3e-18	89	Arabidopsis thaliana	Atcg00590	-	-	hypothetical protein	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.16	3e-13	73	Glycine max	GmaAffx.32146.1.A1_at	BQ273585	-	-	3e-35	Atcg00600	-	C.G.	S.X.	Please select
0.07	1e+0	30	Hordeum vulgare	Contig18816_at	Contig18816	-	-	3e+0	At1g71180	6-phosphogluconate dehydrogenase NAD-binding domain-containing protein	C.G.	S.X.	Please select
0.96	8e-39	159	Oryza sativa	OsAffx.32308.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.16	3e-10	63	Populus trichocarpa	PtpAffx.19894.2.S1_at	CK109353	-	-	9e-18	Atcg00590	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.36	2e-31	133	Triticum aestivum	TaAffx.128795.28.S1_at	CA694690	-	-	3e-9	Atcg00590	-	C.G.	S.X.	Please select
0.04	1e+1	26	Vitis vinifera	1622138_at	CD717692	-	-	1e+0	At4g10970	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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