Gene omics information

Query gene ID	ZmAffx.1471.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1471.1.S1_at	11990232-38	-	-	9e-89	Atcg00580	-	S.X.	H.G.	Please select
0.83	95.6	ZmAffx.1511.1.S1_at	11990232-52	-	-	4e-48	Atcg00740	-	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.1486.1.S1_at	11990232-43	-	-	3e-56	Atcg00650	-	S.X.	H.G.	Please select
0.80	94.0	ZmAffx.1480.1.S1_at	40794996-107	-	-	1e+1	At5g15200	40S ribosomal protein S9 (RPS9B)	S.X.	H.G.	Please select
0.77	92.1	ZmAffx.1538.1.S1_at	40794996-128	-	-	3e+0	At3g21730	dihydroneopterin aldolase family protein	S.X.	H.G.	Please select
0.73	89.9	ZmAffx.1357.1.S1_at	40794996-46	-	-	2e-1	At1g26921	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
39.1	99.9	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
30.4	99.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
27.3	99.7	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.6	99.6	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
25.0	99.6	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
17.6	99.1	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.9	98.9	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.3	98.7	GSM320458	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.00	8e-1	32	Zm.1395.1.S1_at	AY061805.1	defective kernel1	-	2e-100	At1g55350	DEK1 (DEFECTIVE KERNEL 1)	C.G.	S.X.	Please select
0.03	3e+0	30	Zm.9425.1.A1_a_at	BM268756	hypothetical protein LOC100274829	-	2e+1	At5g23440	FTRA1 (ferredoxin/thioredoxin reductase subunit A (variable subunit) 1)	C.G.	S.X.	Please select
0.01	3e+0	30	Zm.5476.3.A1_at	AI676920	hypothetical protein LOC100272988	-	3e-75	At1g24510	T-complex protein 1 epsilon subunit, putative / TCP-1-epsilon, putative / chaperonin, putative	C.G.	S.X.	Please select
0.03	3e+0	30	Zm.17783.1.S1_at	CK370693	ML domain protein	-	1e-1	At1g75550	glycine-rich protein	C.G.	S.X.	Please select
0.04	3e+0	30	Zm.12471.1.A1_at	AW289028	-	-	1e+0	At2g37510	RNA-binding protein, putative	C.G.	S.X.	Please select
0.02	1e+1	28	Zm.9468.1.S1_at	AY108678.1	hypothetical protein LOC100276825	-	2e-13	At1g73350	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	28	Zm.8482.1.S1_at	BM074322	inhibitor of growth protein 5	-	3e-12	At3g24010	ING1 (INHIBITOR OF GROWTH 1)	C.G.	S.X.	Please select
0.03	1e+1	28	Zm.7830.1.S1_at	BM080060	nucleic acid binding protein	-	4e-1	At2g03190	ASK16 (ARABIDOPSIS SKP1-LIKE 16)	C.G.	S.X.	Please select
0.03	1e+1	28	Zm.4719.1.A1_at	BG842494	hypothetical protein LOC100278138	-	1e+0	At4g22810	DNA-binding protein-related	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.91	9e-89	325	Arabidopsis thaliana	Atcg00580	-	-	PSII cytochrome b559. There have been many speculations about the function of Cyt b559, but the most favored at present is that it plays a protective role by acting as an electron acceptor or electron donor under conditions when electron flow through PSII is not optimized.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	1e+1	30	Glycine max	HgAffx.3825.2.A1_at	CK348865	-	-	8e-1	At1g05710	ethylene-responsive protein, putative	C.G.	S.X.	Please select
0.04	1e+1	28	Hordeum vulgare	HK01E08r_s_at	HK01E08r	-	-	4e+0	At2g27340	-	C.G.	S.X.	Please select
0.98	2e-131	468	Oryza sativa	OsAffx.32264.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.84	5e-54	210	Populus trichocarpa	PtpAffx.202631.1.S1_x_at	pmrna5263	hypothetical protein	-	4e-66	Atcg00580	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.26	1e-63	242	Triticum aestivum	TaAffx.6196.1.S1_at	CA673830	-	-	8e-50	Atcg00580	-	C.G.	S.X.	Please select
0.56	7e-93	337	Vitis vinifera	1606704_s_at	CF200937.1	-	-	2e-103	Atcg00580	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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