Gene omics information

Query gene ID	ZmAffx.1467.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.83	95.6	ZmAffx.1467.1.S1_at	11990232-34	-	-	4e-125	Atcg00540	-	S.X.	H.G.	Please select
0.60	77.8	Zm.1483.1.S1_at	BE050487	-	-	1e+0	At5g13470	unknown protein	S.X.	H.G.	Please select
0.46	58.4	Zm.13938.2.S1_at	CK368471	-	-	4e-23	At2g19740	60S ribosomal protein L31 (RPL31A)	S.X.	H.G.	Please select
0.43	52.8	Zm.5102.1.S1_at	AI600843	hypothetical protein LOC100273584	-	9e-11	At5g08020	RPA70B (RPA70-KDA SUBUNIT B)	S.X.	H.G.	Please select
0.38	44.2	Zm.10579.1.S1_at	CD433174	hypothetical protein LOC100277251	-	3e+0	At3g25080	unknown protein	S.X.	H.G.	Please select
0.31	31.6	ZmAffx.86.1.S1_at	AI665323	-	-	5e-5	At5g25265	unknown protein	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
18.7	99.2	GSM320472	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320462	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320459	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.4	98.9	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.3	98.9	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.8	98.7	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.2	98.6	GSM320463	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.02	2e-1	36	Zm.5272.2.A1_a_at	BE553145	-	-	4e-11	At4g22120	early-responsive to dehydration protein-related / ERD protein-related	C.G.	S.X.	Please select
0.02	8e-1	34	Zm.1423.1.A1_at	CF047935	RING zinc finger protein-like	-	2e-7	At1g69330	zinc finger (C3HC4-type RING finger) family protein	C.G.	S.X.	Please select
0.02	3e+0	32	Zm.8506.1.S1_at	CF014984	hypothetical protein LOC100272332	-	1e+0	At3g17300	-	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.3284.1.A1_at	BM952816	-	-	7e-1	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	C.G.	S.X.	Please select
0.01	3e+0	32	Zm.3284.1.A1_x_at	BM952816	-	-	7e-1	At3g01850	ribulose-phosphate 3-epimerase, cytosolic, putative / pentose-5-phosphate 3-epimerase, putative	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.9815.1.A1_at	BM351136	-	-	2e-10	At2g29525	-	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.8833.1.A1_at	BM075816	-	-	2e+0	At5g18310	unknown protein	C.G.	S.X.	Please select
0.02	1e+1	30	Zm.7472.1.A1_at	BM078895	hypothetical protein LOC100274148	-	2e+0	At4g23690	disease resistance-responsive family protein / dirigent family protein	C.G.	S.X.	Please select
0.01	1e+1	30	Zm.5808.1.A1_at	BM078229	peroxidase 39	-	7e-1	At5g58400	peroxidase, putative	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.83	4e-125	448	Arabidopsis thaliana	Atcg00540	-	-	Encodes cytochrome f apoprotein; involved in photosynthetic electron transport chain; encoded by the chloroplast genome and is transcriptionally repressed by a nuclear gene HCF2.	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.03	3e+0	34	Glycine max	Gma.3282.1.S1_at	BQ298724	-	-	2e+0	At2g36830	GAMMA-TIP (GAMMA TONOPLAST INTRINSIC PROTEIN)	C.G.	S.X.	Please select
0.04	2e-5	50	Hordeum vulgare	HS09J14u_at	HS09J14u	-	-	9e-1	Atcg00540	-	C.G.	S.X.	Please select
0.96	0	1477	Oryza sativa	OsAffx.32260.1.A1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.83	0	644	Populus trichocarpa	PtpAffx.219022.1.S1_at	pmrna34812	-	-	0	Atcg00540	-	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.11	3e-24	113	Triticum aestivum	TaAffx.21659.1.A1_at	CD875485	-	-	6e-9	Atcg00540	-	C.G.	S.X.	Please select
0.17	0	775	Vitis vinifera	1620102_at	CF514700	-	-	0	Atcg00540	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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