Gene omics information

Query gene ID	ZmAffx.1448.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1448.1.S1_at	40794996-5	-	-	7e-1	At4g37730	AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)	S.X.	H.G.	Please select
0.67	85.8	ZmAffx.1449.1.S1_at	40794996-6	-	-	1e+0	At3g32090	transcription factor-related	S.X.	H.G.	Please select
0.55	71.6	ZmAffx.1414.1.S1_at	40794996-89	-	-	0	Atmg00520	-	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.1352.1.S1_at	40794996-156	-	-	0	Atmg00160	-	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.1386.1.S1_at	40794996-61	-	-	7e-1	At3g21920	pollen coat receptor kinase, putative	S.X.	H.G.	Please select
0.29	28.1	ZmAffx.1416.1.S1_at	40794996-91	-	-	3e-1	At3g21860	ASK10 (ARABIDOPSIS SKP1-LIKE 10)	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
24.2	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.5	99.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.7	99.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
18.5	99.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.5	99.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.4	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.5	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320460	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	38	Zm.161.1.S1_a_at	M77122.1	protein b-32	-	1e-1	At1g65270	unknown protein	C.G.	S.X.	Please select
0.01	2e-2	38	Zm.161.2.S1_a_at	X70153.1	protein b-32	-	9e-2	At1g65270	unknown protein	C.G.	S.X.	Please select
0.01	2e-2	38	Zm.161.2.S1_x_at	X70153.1	protein b-32	-	9e-2	At1g65270	unknown protein	C.G.	S.X.	Please select
0.02	3e-1	34	Zm.6768.1.S1_at	AI396277	anther-specific proline-rich protein APG	-	2e-4	At1g29670	GDSL-motif lipase/hydrolase family protein	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.7367.1.A1_at	BM078099	-	-	5e+0	At4g33730	pathogenesis-related protein, putative	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.4807.1.A1_at	CO518291	hypothetical protein LOC100273970	-	1e+0	At3g60286	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	30	Zm.8706.1.A1_at	BM075281	-	-	4e+0	At4g05050	UBQ11 (UBIQUITIN 11)	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5911.1.S1_at	AY108752.1	dimethyladenosine transferase	-	7e-4	At2g47420	dimethyladenosine transferase, putative	C.G.	S.X.	Please select
0.02	5e+0	30	Zm.5742.1.A1_at	AY104651.1	hypothetical protein LOC100191909	-	8e+0	At3g62070	unknown protein	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	7e-1	34	Arabidopsis thaliana	At4g37730	829929	AtbZIP7 (Arabidopsis thaliana basic leucine-zipper 7)	F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PMOFB	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.08	1e-2	40	Glycine max	GmaAffx.92646.1.S1_s_at	CF808371	-	-	2e+0	At3g53611	unknown protein	C.G.	S.X.	Please select
0.04	1e+0	32	Hordeum vulgare	Contig18564_at	Contig18564	-	-	2e-5	At2g41905	unknown protein	C.G.	S.X.	Please select
0.04	5e+0	32	Oryza sativa	OsAffx.16517.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.04	9e-1	34	Populus trichocarpa	PtpAffx.223979.1.S1_at	pmrna42205	hypothetical protein	-	3e+0	At5g56420	F-box family protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	2e-1	36	Triticum aestivum	TaAffx.5632.1.S1_at	CA704766	-	-	4e+0	At2g12465	LCR50 (Low-molecular-weight cysteine-rich 50)	C.G.	S.X.	Please select
0.04	3e+0	30	Vitis vinifera	1619640_at	CB340750	-	-	4e+0	At4g01220	-	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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