Gene omics information

Query gene ID	ZmAffx.1422.1.S1_at
Gene name
Organism	Zea mays

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF	%ile	Gene/Probe ID	Repr.ID	Gene Name	Functional Description	Ev	AGI code	Arabidopsis gene name	S.X.	H.G.	Other DB
0.91	99.0	ZmAffx.1422.1.S1_at	40794996-97	-	-	3e+0	At3g06180	structural constituent of ribosome	S.X.	H.G.	Please select
0.61	79.5	ZmAffx.1376.1.S1_s_at	40794996-51	-	-	0	Atmg00080	-	S.X.	H.G.	Please select
0.60	77.8	ZmAffx.159.1.A1_at	AI668136	-	-	1e+1	At5g48680	sterile alpha motif (SAM) domain-containing protein	S.X.	H.G.	Please select
0.53	69.1	ZmAffx.1414.1.S1_at	40794996-89	-	-	0	Atmg00520	-	S.X.	H.G.	Please select
0.50	65.7	ZmAffx.147.1.A1_at	AI667831	Hypothetical protein LOC100192026	-	3e+0	At2g20260	PSAE-2 (photosystem I subunit E-2)	S.X.	H.G.	Please select
0.42	51.3	ZmAffx.1346.1.S1_at	40794996-153	-	-	5e-21	Atmg00160	-	S.X.	H.G.	Please select

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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.

Std2 GX	%ile	GSM ID	Assay Name	GSE ID	Experiment Title
25.8	99.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
22.0	99.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.7	99.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
21.5	99.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.9	99.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
20.1	99.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.7	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.6	99.1	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.1	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320464	protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF	Ev	BS	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.01	2e-2	38	Zm.17246.1.S1_at	AY466159.1	DEAD box RNA helicase1	-	5e-12	At5g63120	ethylene-responsive DEAD box RNA helicase, putative (RH30)	C.G.	S.X.	Please select
0.04	3e-1	34	ZmAffx.661.1.A1_at	AI715041	-	-	1e+1	At4g16540	heat shock protein-related	C.G.	S.X.	Please select
0.04	3e-1	34	ZmAffx.661.1.S1_at	AI715041	-	-	1e+1	At4g16540	heat shock protein-related	C.G.	S.X.	Please select
0.04	3e-1	34	Zm.10612.1.A1_at	BM073146	-	-	1e+0	At3g29152	-	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.1126.1.A1_at	AW313158	-	-	3e+0	At2g28605	-	C.G.	S.X.	Please select
0.04	1e+0	32	ZmAffx.1126.1.S1_at	AW313158	-	-	3e+0	At2g28605	-	C.G.	S.X.	Please select
0.03	1e+0	32	Zm.4997.1.A1_at	AI586910	-	-	4e-1	At3g58840	-	C.G.	S.X.	Please select
0.04	1e+0	32	Zm.1354.1.A1_at	BM382340	hypothetical protein LOC100278364	-	9e-1	At1g10155	ATPP2-A10 (PHLOEM PROTEIN 2-A10)	C.G.	S.X.	Please select
0.01	5e+0	30	Zm.655.1.A1_at	AF318580.1	Glk1 protein	-	1e-6	At5g44190	GLK2 (GOLDEN2-LIKE 2)	C.G.	S.X.	Please select

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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF	Ev	BS	Species	Gene ID	Repr. ID	Gene Name	Functional description	Ev	AGI code	Arabidopsis gene name	C.G.	S.X.	Other DB
0.03	3e+0	32	Arabidopsis thaliana	At3g06180	819792	structural constituent of ribosome	F:structural constituent of ribosome;P:translation;C:ribosome, intracellular, chloroplast;PFO	-	-	-	C.G.	S.X.	Please selectath TAIR (integral)ath,osa KEGG (integral)ath PlantTribes (integral)ath,osa Gramene (integral)ath MPSS (genome)ath InParanoid (ortholog)ath Plant RBP (ortholog)ath SIGnAL (T-DNA)ath RAFL (full-length clone)ath AtGDB (genome)ath Genevestigator (expression)ath,ptr eFP Browser (expression)ath AVT (expression)ath ATTED-II (co-expression)ath AtcisDB (cis-element)ath SUBA (hydropathy)ath AtProteomeath Plant Proteome Databaseath PMN (pathway)ath,osa KaPPA-View 4 (pathway)ath RnR (over-expression)ath iHOP (report)
0.04	4e+0	32	Glycine max	Gma.9797.1.S1_at	CA936781	-	-	8e-1	At1g47760	AGL102 (AGAMOUS-LIKE 102)	C.G.	S.X.	Please select
0.03	6e+0	30	Hordeum vulgare	Contig18390_at	Contig18390	-	-	4e+0	At1g53110	-	C.G.	S.X.	Please select
0.05	6e+0	32	Oryza sativa	OsAffx.24983.1.S1_at	-	-	-	0			C.G.	S.X.	Please selectath,osa KEGG (integral)ath,osa Gramene (integral)ath,osa KaPPA-View 4 (pathway)
0.06	4e-3	42	Populus trichocarpa	PtpAffx.207402.1.S1_at	pmrna14693	hypothetical protein	-	2e+0	At1g80940	unknown protein	C.G.	S.X.	Please selectath,ptr eFP Browser (expression)
0.04	1e+1	30	Triticum aestivum	TaAffx.4396.1.S1_at	CA742873	-	-	2e+0	At5g64667	IDL2 (INFLORESCENCE DEFICIENT IN ABSCISSION (IDA)-LIKE 2)	C.G.	S.X.	Please select
0.04	4e+0	30	Vitis vinifera	1622585_s_at	CF405272	hypothetical protein LOC100252123	-	6e-1	At2g01260	unknown protein	C.G.	S.X.	Please select

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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC	GO ID	Process Name

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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID	Link to Kappa-View	Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID	Link to KEGG PATHWAY	Pathway Name

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